Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0701
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 44 9e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 41 6e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 39 0.003
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 39 0.003
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 39 0.003
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.006
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.013
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 36 0.018
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.023
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.023
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 36 0.023
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 35 0.041
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 35 0.054
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 35 0.054
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 34 0.071
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 34 0.094
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 33 0.16
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 33 0.16
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 33 0.16
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 33 0.22
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 32 0.29
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 32 0.29
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 32 0.29
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 32 0.38
At5g24440.1 68418.m02880 RNA-binding protein, putative 32 0.38
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 32 0.38
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.50
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 31 0.50
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 31 0.66
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 31 0.66
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.66
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.66
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.66
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 31 0.66
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 31 0.88
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 0.88
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 30 1.2
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 30 1.2
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 30 1.2
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 30 1.2
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 30 1.5
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 2.0
At4g10610.1 68417.m01735 RNA-binding protein, putative 29 2.7
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 2.7
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 29 2.7
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 29 3.5
At5g23520.1 68418.m02760 expressed protein 29 3.5
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 29 3.5
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 29 3.5
At5g58750.1 68418.m07359 wound-responsive protein-related simila... 28 4.7
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 28 4.7
At4g37580.1 68417.m05319 N-acetyltransferase, putative / hookles... 28 6.2
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 28 6.2
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6... 28 6.2
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 8.2
At5g27760.1 68418.m03329 hypoxia-responsive family protein conta... 27 8.2
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 27 8.2
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 27 8.2
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 27 8.2
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 27 8.2
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+ +++ NLD V + KL+E+F G + SC +++ LSR + Y +P EA
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEA 381
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
+FI NLD + L E F G I+SC +
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKV 163
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+++ NLD V+E LRE F G+IVS +I +++L R A + +D+P +A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
++ I++ N++V VTE +LR+ F CG I S ++ + S+ + + P EA
Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEA 357
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+ +F+ NL VT + L+++F G IVSC + +D SR ++++ A
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAA 165
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+ +++ NLD VT+ KLRE F G I SC ++ +SR + + P EA
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEA 380
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
+ IFI NLD + L E F G I+SC + V S+ ++YD
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYD 181
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
+++G+LD VT+S+L E F GQ+VS +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRV 76
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+++ NL +++ +L +VFG G SC I+ + S+ + +++ +A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDA 277
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +2
Query: 410 AQSSKHETYGLSLNF-LESL--NIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCS 580
AQ + T L F LE + ++K +++ NLD V +KL E+F G I SC
Sbjct: 194 AQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCK 253
Query: 581 IIVKDDKLSRYMAKIEYDHPXEA 649
++V + +S+ + +E+ EA
Sbjct: 254 VMVHSNGISKGVGFVEFSTSEEA 276
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 473 KLPLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
K + +++ NL T++ L+ +FG G+I S ++++KD
Sbjct: 114 KSRVFTNVYVKNLVETATDADLKRLFGEFGEITS-AVVMKD 153
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
+F+ NLD + +L ++F G+++SC +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKV 62
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 500 IGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+ NL +T +LR++F +CG +V CSI S+++A IEY + EA
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITD-----SKHIAYIEYSNSEEA 399
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+++ NLD V + KL+E+F G + S +++ +SR + Y +P EA
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEA 385
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
IFI NLD + L E F G I+SC + + S+ ++++ A
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.013
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIV 589
+K+FIG L TE L E F CGQ+V I++
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVM 67
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
+ +F+ NLD V L E F CG IVSC + SR +++D
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFD 182
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+++ NLD VT+ KLRE+F G I SC ++ S+ + + EA
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEA 381
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = +2
Query: 449 NFLESLNIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSR 610
NF+ N++ + +++ NL + E++LRE+FG GQIVS ++ ++ S+
Sbjct: 294 NFIAKPNMRW---SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSK 344
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYD 634
+++ NLD +T S L +F G I+SC +V+++ S+ +++D
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCK-VVEENGQSKGFGFVQFD 159
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.9 bits (79), Expect = 0.023
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 410 AQSSKHETYGLSLNFLESLNIKLPLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIV 589
+Q+S H T S+ L+S I+ +KIF+G + E LRE F G++V IIV
Sbjct: 12 SQTSSHVTASSSM--LQS--IRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIV 67
Query: 590 -KDDKLSRYMAKIEYDHPXEA 649
++ SR A + + EA
Sbjct: 68 DRETGRSRGFAFVTFTSTEEA 88
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
+++GN+ + VTE L+EVF G + SC +I K+
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKE 89
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
+++ +LD VTE +L +F CGQ+V C I + + R+ A IE+
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRF-AFIEF 219
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
++ GN+ VTE L+E+F G I SC +I KD
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKD 98
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
++ GN+ VTE L+E+F G I SC +I KD
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKD 98
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 34.3 bits (75), Expect = 0.071
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
+++ ++D VTE L VF CGQ+V C + + + R+ A IE+
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRF-AFIEF 215
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
+++ ++D VTE L +F CGQ+V C I + + R+ A +E+
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRF-AFVEF 174
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
++++GNL +T S+L ++FG G +V I+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIV 148
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
+++ ++D VTE L +F CGQ+V C I + R+ A +E+
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRF-AFVEF 187
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIV-KDDKLSRYMAKIEYD 634
+KIF+G L L+E FG G+IV +++ ++ LSR + YD
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYD 85
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDD 598
+K+F+GNL VT L F CG +V ++ D
Sbjct: 177 HKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGD 213
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 479 PLLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
P IF+G +D VTE L+ VFG G++V I
Sbjct: 275 PTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI 309
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 482 LLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDD 598
L ++IF+G L VTE +L F G+I C I+V D
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRD 48
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 482 LLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDD 598
L ++IF+G L VTE +L F G+I C I+V D
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRD 48
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
IF+G LD VT+ +L+ +FG G+++ I
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKI 291
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
+++ ++D VTE +L +F CGQ+V C + + R+ A IE+
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRF-AFIEF 183
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
+IF+G+LD +E L++VFG+ G++ I+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRIL 246
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
+ +++ NLD +++ KL+E+F G + S ++ + S+ + + P EA
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEA 185
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
+++GN+ VTE L+E+F G + S +I KD
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKD 94
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDD 598
++IF+G L VT+ L F G I+ C I+++ D
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERD 43
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
+F+GN+ TE +LRE+ G G +VS ++
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLV 41
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIV 589
IF+G LD VT+ L++ F G+IVS I V
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV 339
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIV 589
IF+G LD VT+ L++ F G+IVS I V
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV 337
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
+F+G LD VT+ L+ VF G+IV I
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSI 583
+F+G LD VT+ L+ VF G+IV I
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
+ KIF+GNL T LR F GQ+V +++
Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVV 44
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 482 LLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
L K+F+ NL ++ + + E+FG CG + + II + D +R A + EA
Sbjct: 93 LKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEA 148
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 482 LLNKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKD 595
+ ++++GNL T+ LRE F G +V +I+++D
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVD-AIVMRD 37
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSR 610
KIF+G + VTE +L++ F G +V +I +D + +R
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVI-RDHETNR 148
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSR 610
KIF+G + VTE +L++ F G +V +I +D + +R
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVI-RDHETNR 148
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIV 589
IF+G LD VTE L + F G++VS I V
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV 360
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 521 VTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
VTE +LR+VF G+I + K D SR A I + EA
Sbjct: 14 VTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEA 56
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQI--VSCSIIVKDDKLSRYMAKIEYD 634
NK+++G + TE ++R F CG I V C + +D S +A I +D
Sbjct: 161 NKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSG-IAFITFD 210
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
+++ ++D VTE +L +F GQ+V C I + + R+ A IE+
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRF-AFIEF 196
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEYDHPXEA 649
N +++G+L TES L E+FG G I ++ SR A I Y H EA
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEA 66
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 494 IFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKL--SRYMAKIEYD 634
+FIGNLD V E L + F G I S I++D SR I YD
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYD 162
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIV 589
+K+FIG + + E LRE F G++V +I+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVIL 73
>At5g23520.1 68418.m02760 expressed protein
Length = 435
Score = 28.7 bits (61), Expect = 3.5
Identities = 26/115 (22%), Positives = 47/115 (40%)
Frame = +1
Query: 238 SIQQEKEYEQKHL*TLETENSVKPENARLPKSGTASRAIAPVAAANEREHCNGANERRPK 417
SI E E+E+ L ++++K + S A A A+ ++H + A E
Sbjct: 230 SIPIEPEWEEDDLYLSHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLA 289
Query: 418 LET*NIRTQFELFGVFEHKAAVTKQDLHWEPGRLGYGVEAARGVRLLRTNSQLLD 582
E N ++ G+ + K DLH G+ A V+ L+ Q+++
Sbjct: 290 AEKLNAEAAKKIIGITNKDNDIWKLDLH--------GLHATEAVQALQERLQMIE 336
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSII 586
N +++G L +TE +R VF G +++ I+
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIV 39
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 491 KIFIGNLDVLVTE----SKLREVFGYCGQIVSCSI-IVKDDKLSRYMAKIEYDHPXE 646
KIF+ D ++E + LRE F CG+I + S+ I +D S+ +A +E+ E
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKE 458
>At5g58750.1 68418.m07359 wound-responsive protein-related similar
to induced upon wounding stress [Arabidopsis thaliana]
GI:1483218
Length = 386
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 136 GQICKFLHMQFGFDGARKCGN*WKKTF 216
G +CK+L++ F F G R+C W++++
Sbjct: 216 GAMCKYLNLPFVFGGTREC---WEESY 239
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 488 NKIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLS 607
NKIF+G L + LR+ FG G I + I KD K S
Sbjct: 240 NKIFVGRLPQEASVDDLRDYFGRFGHIQD-AYIPKDPKRS 278
>At4g37580.1 68417.m05319 N-acetyltransferase, putative / hookless1
(HLS1) contains Pfam profile PF00583: acetyltransferase,
GNAT family; identical to cDNA putative
N-acetyltransferase hookless1 (HLS1) GI:1277089
Length = 403
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 101 LFIEDNGDPSCLVKFANSYICNLALMELENVEIDG 205
LF + GDP C ++ + SY+ +A M E EI G
Sbjct: 33 LFTDLLGDPICRIRHSPSYLMLVAEMGTEKKEIVG 67
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVS 574
++++++GNLD VTE +L + F G I S
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRS 30
>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
HD-ZIP transcription factor 6 identical to
homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
ATHB-6) (SP:P46668) [Arabidopsis thaliana]
Length = 311
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 247 QEKEYEQKHL*TLETENSVKPENARLPKSGTASRAIAPVAAANEREHCNGANER 408
+E+E E T E++ SVK E LP+ T AP + EH +G N R
Sbjct: 164 EEEEEENNAAVTTESDISVKEEEVSLPEKITE----APSSPPQFLEHSDGLNYR 213
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDK 601
KIF+G L T ++ + FG G+I S+I+KD K
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITD-SVIMKDRK 78
>At5g27760.1 68418.m03329 hypoxia-responsive family protein contains
Pfam profile: PF04588 hypoxia induced protein conserved
region
Length = 96
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 292 ENSVKPENARLPKSGTASRAIAPVAAANEREHCNGANERRPK 417
+ SV+ +ARL A+A AA +H +GA +R PK
Sbjct: 45 KTSVRIIHARLHAQALTLAALAGAAAVEYYDHKSGATDRIPK 86
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 485 LNKIFIGNLDVLVTESKLREVFGYCGQIVS 574
++++++GNLD VTE +L + F G + S
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRS 30
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
K+F+G+L+ TE ++ E+F G + ++ + + SR ++Y
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKY 258
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSRYMAKIEY 631
K+F+G+L+ TE ++ E+F G + ++ + + SR ++Y
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKY 258
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 491 KIFIGNLDVLVTESKLREVFGYCGQIVSCSIIVKDDKLSR 610
K+F+G + E KLRE F G+ VS +I+++D R
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGE-VSQAIVMRDKLTGR 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,946,660
Number of Sequences: 28952
Number of extensions: 241884
Number of successful extensions: 798
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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