Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0700
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   271   7e-74
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    52   8e-08
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    28   1.1  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    27   2.0  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    27   2.6  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    26   4.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   6.0  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   7.9  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  271 bits (664), Expect = 7e-74
 Identities = 124/172 (72%), Positives = 147/172 (85%)
 Frame = +1

Query: 1   LWSSTGMLVPPKXKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSMLQVWPVRQPRPVTE 180
           L++   +++PP+ +GTVTYIA AG+Y V + +LE EF+G++  +SML  WPVR  RPV +
Sbjct: 168 LFNDHKIMLPPRARGTVTYIAEAGSYHVDEKLLEVEFNGKKHSFSMLHTWPVRAARPVAD 227

Query: 181 KLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGE 360
            L AN PLLTGQRVLD+L+PCVQGGTTAIPGAFGCGKTVISQ+LSKYSNSD+I+YVGCGE
Sbjct: 228 NLTANQPLLTGQRVLDALYPCVQGGTTAIPGAFGCGKTVISQSLSKYSNSDLIVYVGCGE 287

Query: 361 RGNEMSEVLRDFPELTVEIEGVTESIMKRTALVANTSNMPVAAREASIYTGI 516
           RGNEM+EVL DFPELT++I G  E IMKRT LVANTSNMPVAAREASIYTGI
Sbjct: 288 RGNEMAEVLMDFPELTIDINGKPEPIMKRTTLVANTSNMPVAAREASIYTGI 339



 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 29/57 (50%), Positives = 35/57 (61%)
 Frame = +3

Query: 525 GDFSDPVTAATLGIVXXVPXXXXXXXXXXXXFPSINWLISYSKYMRALRRLLREKLP 695
           GDFSDPVT+ATLGIV  V             FPSIN  +SYSKY+ AL+    E++P
Sbjct: 423 GDFSDPVTSATLGIV-QVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERVP 478



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 581 WGLDKKLAQRKHFP 622
           WGLDKKLAQRKHFP
Sbjct: 441 WGLDKKLAQRKHFP 454


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
 Frame = +1

Query: 118 ERQKYSMLQVWPVRQPRPVTEKLPANHPLL-TGQRVLDSLFPCVQGGTTAIPGAFGCGKT 294
           ER     ++  P+    P  E+      +L TG +V+D L P  +GG   + G  G GKT
Sbjct: 151 ERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKT 210

Query: 295 VISQALSK---YSNSDVIIYVGCGERGNEMSEVLRDFPEL-TVEIEGVTESIMKRTALVA 462
           V  Q L      ++    ++ G GER  E +++ R+  E   +++EG  ES   + ALV 
Sbjct: 211 VFIQELINNIAKAHGGYSVFTGVGERTREGNDLYREMQETGVIKLEG--ES---KAALVF 265

Query: 463 NTSNMPVAAREASIYTGI 516
              N P  AR     TG+
Sbjct: 266 GQMNEPPGARARVALTGL 283


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 193 NHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSD 333
           N P+L G       F    G   A  GA GCGK+ I + L ++ ++D
Sbjct: 455 NRPILNG-----CSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTD 496


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
 Frame = +1

Query: 196 HPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKT--VISQALSKYSNSDVII-YVGCGERG 366
           HP L  QR +D+    +Q     I G     K+  VISQAL+KY  +DV++  V     G
Sbjct: 66  HPSLI-QRQIDACLSDIQCRVVKI-GMLPDPKSIPVISQALTKYKITDVVMDSVIISSMG 123

Query: 367 NEMSE-------VLRDFPELTVEIEGVTESIM 441
           N M E       +   FP L V    V E+ +
Sbjct: 124 NVMCETPTIPATIQHLFPHLLVYASNVMEAFI 155


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
 Frame = +1

Query: 199 PLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQAL----SKYSNSD------VIIYV 348
           P+ TG + +DS+ P  +G    I G    GKT I+        +++NS         +YV
Sbjct: 173 PMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNHKRWNNSSDESKKLYCVYV 232

Query: 349 GCGERGNEMSEVLRDFPE 402
             G++ + ++++++   E
Sbjct: 233 AVGQKRSTVAQLVQKLEE 250


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 335 TSELEYLDRAWEMTVLPQPKAPGMAVVPPCTQGKSESST-----RCPVSSGWLAGS 183
           T  ++Y DRA E  ++P   +  +      +QG S  ST     +   S GW  GS
Sbjct: 452 TESVDYRDRATERRIVPAASSDTIVEAKKSSQGSSFHSTSNVSMKMLNSMGWNKGS 507


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 205 LTGQRVLDSLFPCVQGGTTAIP 270
           LTG   L+  F C+  GT AIP
Sbjct: 56  LTGDETLNLKFTCILNGTGAIP 77


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 184 LPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVI 300
           LP+N       + L+S+    Q G T + G   CGK V+
Sbjct: 719 LPSNRLYTYNDKQLESILRGSQPGLTMVNGPTRCGKHVL 757


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +1

Query: 370 EMSEVLRDFPELTVEIEGVTESIMKRTALVANTSNMPV 483
           ++S    DFP +   +     S+  +  +V +T+N+P+
Sbjct: 440 KLSRFANDFPRMVPSMGSTETSVGDQVEVVGDTTNVPI 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,989
Number of Sequences: 5004
Number of extensions: 36867
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)