Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0700
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 254 7e-68
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 216 1e-56
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 30 1.5
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 30 2.0
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 29 2.7
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 29 2.7
04_04_1403 - 33292878-33292927,33293012-33293038,33293129-332931... 29 3.5
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303... 29 4.7
08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713... 28 6.2
05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507 28 6.2
02_03_0087 + 15073687-15074179,15074490-15074509 28 6.2
01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455 28 6.2
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 6.2
08_01_0180 - 1524302-1524877,1525998-1527056 28 8.2
02_04_0296 - 21685860-21686234 28 8.2
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 254 bits (621), Expect = 7e-68
Identities = 120/165 (72%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 VPPKXKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSMLQVWPVRQPRPVTEKLPANHPL 204
+PP G ++YIAPAG Y + D VLE EF G +++++MLQ WPVR PRPV EKL A+ PL
Sbjct: 173 LPPGAMGKISYIAPAGQYSLQDTVLELEFQGIKKEFTMLQTWPVRSPRPVMEKLAADTPL 232
Query: 205 LTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEV 384
LTGQRVLD+LFP V GGT AIPGAFGCGKTVISQALSKYSNS ++YVGCGERGNEM+EV
Sbjct: 233 LTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSQAVVYVGCGERGNEMAEV 292
Query: 385 LRDFPELTVEIE-GVTESIMKRTALVANTSNMPVAAREASIYTGI 516
L DFP+LT+ E G ES+MKRT LVANTSNMPVAAREASIYTGI
Sbjct: 293 LMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGI 337
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/46 (56%), Positives = 29/46 (63%)
Frame = +3
Query: 525 GDFSDPVTAATLGIVXXVPXXXXXXXXXXXXFPSINWLISYSKYMR 662
GDFSDPVT+ATL IV V FPS+NWLISYSKY +
Sbjct: 421 GDFSDPVTSATLSIVQ-VFWGLDKKLAQRKHFPSVNWLISYSKYSK 465
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 581 WGLDKKLAQRKHFP 622
WGLDKKLAQRKHFP
Sbjct: 439 WGLDKKLAQRKHFP 452
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 216 bits (528), Expect = 1e-56
Identities = 110/165 (66%), Positives = 125/165 (75%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 VPPKXKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSMLQVWPVRQPRPVTEKLPANHPL 204
+PP G ++YIAPAG Y LQ WPVR PRPV+ KL A+ PL
Sbjct: 206 LPPGSMGKISYIAPAGQYS-------------------LQTWPVRSPRPVSSKLAADTPL 246
Query: 205 LTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEV 384
LTGQRVLD+LFP V GGT AIPGAFGCGKTVISQALSKYSNS+ ++YVGCGERGNEM+EV
Sbjct: 247 LTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSEAVVYVGCGERGNEMAEV 306
Query: 385 LRDFPELTVEI-EGVTESIMKRTALVANTSNMPVAAREASIYTGI 516
L DFP+LT+ + +G ES+MKRT LVANTSNMPVAAREASIYTGI
Sbjct: 307 LMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI 351
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/48 (58%), Positives = 31/48 (64%)
Frame = +3
Query: 525 GDFSDPVTAATLGIVXXVPXXXXXXXXXXXXFPSINWLISYSKYMRAL 668
GDFSDPVT+ATL IV V FPS+NWLISYSKY +AL
Sbjct: 435 GDFSDPVTSATLSIVQ-VFWGLDKKLAQRKHFPSVNWLISYSKYSKAL 481
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 581 WGLDKKLAQRKHFP 622
WGLDKKLAQRKHFP
Sbjct: 453 WGLDKKLAQRKHFP 466
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 314 DRAWEMTVLPQPKAPGMAVVPPCTQGKSESS 222
+R+W + PQP PG A++PP +GK +S
Sbjct: 745 ERSWALGRSPQPSPPGHALLPP--EGKEMTS 773
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Frame = +1
Query: 250 GGTTAIPGAFGCGKTVISQALSKY--SNSDVIIYVGCGERGNEMSEVLRDFPELTVE--- 414
G A+ G+ GCGK+ + L ++ S I+ G + ++ + R+ ++ E
Sbjct: 407 GKVVALVGSSGCGKSTVISLLQRFYDPTSGSILIDGHSIKKLDLESLRRNIASVSQEPSL 466
Query: 415 IEGVTESIMKRTALVANTSNMPVAAREASIYTGI 516
G + ++ + AN + AAR A++++ I
Sbjct: 467 FSGTIKDNLRIGKMDANDDEITKAARTANVHSFI 500
>05_07_0004 +
26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 193 NHPLLTGQRVLDSLFPCVQGGTT-AIPGAFGCGKTVISQALSKY 321
++P + Q + D CV GTT AI G G GK+ + + ++
Sbjct: 377 SYPSRSEQLIFDGFSMCVSNGTTMAIVGESGSGKSTVINLVERF 420
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 206 SSGWLAGSFSVTGRGWRTGHTCNMLYFCR 120
+SGWLAG+ V G G T + +L CR
Sbjct: 43 TSGWLAGALGVAGAGAATFYCMLLLLDCR 71
>04_04_1403 -
33292878-33292927,33293012-33293038,33293129-33293198,
33293672-33293741,33294441-33294499,33294613-33295011
Length = 224
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 244 VQGGTTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSE 381
+ G TAI GA GC ALS++ V GE +E SE
Sbjct: 16 IPGAATAIAGAAGCFALGYFLALSRFPRQVVAASPASGETSDEDSE 61
>02_03_0138 -
15629421-15629440,15629521-15629752,15630115-15630348,
15630486-15630709,15631225-15631509,15631549-15631690
Length = 378
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 34 KXKGTVTYIAPAGNYKVTDVVLE 102
K + T++ AGNY+VTDVVLE
Sbjct: 71 KARMTISLDRGAGNYEVTDVVLE 93
>08_02_1328 +
26170248-26170493,26170702-26170798,26171325-26171342,
26171566-26171666,26173486-26173562,26173736-26173802,
26176467-26176577,26176652-26176749,26176834-26176903
Length = 294
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 296 TVLPQPKAPGMAVVPPCTQGKSESSTRCPVSSGWLAGSFSVTGRGWRTGH 147
++LP P P A T S RC +++ A +S +GWR H
Sbjct: 3 SLLPSPVFPTAAAAAASTSSSSRCRCRCRITTSSSAHGWS-NCQGWRLHH 51
>05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507
Length = 353
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 302 EMTVLPQPKAPGMAVVPPCTQGKSESSTRCPVSSG 198
E+ LP P +PG PP T PVS+G
Sbjct: 127 EVLALPPPPSPGTPAPPPPAAEAQSPVTPAPVSTG 161
>02_03_0087 + 15073687-15074179,15074490-15074509
Length = 170
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 266 MAVVPPCTQGKSESSTRCPVSSGWLAGSFSVTG 168
MA+VP +G+ E+S R P ++ AGS ++ G
Sbjct: 79 MALVPGGQEGREETSLRDPDAAAAAAGSCTIVG 111
>01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455
Length = 249
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 314 DRAWEMTVLPQPKAPGMAVVPPCTQGKSESSTRCPVSSG 198
D W V Q K A PCT SSTRCP++ G
Sbjct: 145 DSEWAAHVDQQHK---QAKAMPCTSACHFSSTRCPIARG 180
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -3
Query: 287 PQPKAPGMAVVPPCT---QGKSESSTRCPVSSG-WLAGSFSVTGRG 162
P P P +A C GK STRC VS L G +TG G
Sbjct: 56 PPPPPPPVAPAATCEGDLHGKGNFSTRCEVSEEVELGGDVYITGEG 101
>08_01_0180 - 1524302-1524877,1525998-1527056
Length = 544
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 432 VHHEAHGAGGQHLQHARGGARGLHLYRHHAVGDFSDPV 545
V+HE G GG+ + + +H+ R H G +P+
Sbjct: 186 VYHEERGGGGERAVYCLATSGDVHVLRLHDAGGAFEPL 223
>02_04_0296 - 21685860-21686234
Length = 124
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 269 GMAVVPPCTQGKSESSTRCPVSSGWLAGSFSVTGRGWR 156
G A V + + S++R +SGW A + S RGWR
Sbjct: 54 GAAAVAAGEKTRQRSASR-EETSGWSAAASSAVARGWR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,637
Number of Sequences: 37544
Number of extensions: 362572
Number of successful extensions: 1628
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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