Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0700
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 298 2e-81
SB_51127| Best HMM Match : DUF680 (HMM E-Value=3.2) 50 1e-06
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 44 2e-04
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 31 0.68
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_42428| Best HMM Match : 7tm_1 (HMM E-Value=5.60519e-45) 29 4.8
SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3) 29 4.8
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_21612| Best HMM Match : Orthoreo_P17 (HMM E-Value=6.9) 28 6.3
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 298 bits (732), Expect = 2e-81
Identities = 138/166 (83%), Positives = 152/166 (91%)
Frame = +1
Query: 19 MLVPPKXKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSMLQVWPVRQPRPVTEKLPANH 198
+++ PK KGT+TYIAP GNY + D +LE +FDGE+ K+ MLQVWPVRQ RPVT+K+ ANH
Sbjct: 24 IMLHPKAKGTITYIAPQGNYYIEDTILEIDFDGEKSKHCMLQVWPVRQMRPVTDKMAANH 83
Query: 199 PLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMS 378
PLLTGQRVLD+LFPCVQGGTTAIPGAFGCGKTVISQ+LSK+SNSDVIIYVGCGERGNEMS
Sbjct: 84 PLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMS 143
Query: 379 EVLRDFPELTVEIEGVTESIMKRTALVANTSNMPVAAREASIYTGI 516
EVLRDFPELTVEI G ESIMKRTALVANTSNMPVAAREASIYTGI
Sbjct: 144 EVLRDFPELTVEINGQVESIMKRTALVANTSNMPVAAREASIYTGI 189
Score = 58.0 bits (134), Expect = 7e-09
Identities = 32/57 (56%), Positives = 34/57 (59%)
Frame = +3
Query: 525 GDFSDPVTAATLGIVXXVPXXXXXXXXXXXXFPSINWLISYSKYMRALRRLLREKLP 695
GDFSDPVT+ATL IV V FPSINWLISYSKYMRAL + P
Sbjct: 273 GDFSDPVTSATLNIVQ-VFWGLDKKLAQRKHFPSINWLISYSKYMRALDDYYEKNYP 328
>SB_51127| Best HMM Match : DUF680 (HMM E-Value=3.2)
Length = 94
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 439 MKRTALVANTSNMPVAAREASIYT 510
MKRTALVANTSNMPVAAREASIYT
Sbjct: 1 MKRTALVANTSNMPVAAREASIYT 24
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +1
Query: 202 LLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSK---YSNSDVIIYVGCGERGNE 372
L TG +V+D + P +GG + G G GKTV+ Q L + + ++ G GER E
Sbjct: 3 LFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTRE 62
Query: 373 MSEVLRDFPE 402
+++LR+ E
Sbjct: 63 GNDLLREMLE 72
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 202 LLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQAL 312
L TG +V+D L P +GG + G G GKTV+ L
Sbjct: 196 LETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMEL 232
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 172 VTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVIS 303
+ + P+LTG + +DSL P +G I G GKT I+
Sbjct: 74 IIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIA 117
>SB_58724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 208 TGQRVLDSLFPCVQGG-TTAIPGAFGCGKTVISQALS--KYSNSDVI 339
TG++VL S+ ++ G TAI G G GKT + LS Y D++
Sbjct: 149 TGKQVLQSVTGEIRAGEVTAIMGPSGAGKTTLLNTLSGKAYYGEDIM 195
>SB_42428| Best HMM Match : 7tm_1 (HMM E-Value=5.60519e-45)
Length = 311
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 184 LPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVI 339
LP NH ++T + + +LF C+ T F C T+ + + +N +I
Sbjct: 10 LPGNHVIITTESITAALFTCILIILTLTANLFVCVATLRTNSARPLTNYFII 61
>SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)
Length = 384
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 80 KSPTWCWRRSSTVSGRSTACCR 145
K +W + RS VSGRS ACCR
Sbjct: 242 KGVSWVFNRSR-VSGRSRACCR 262
>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 229 SLFPCVQGGTTA-IPGAFGCG 288
S PC+ GG+ IPGAF CG
Sbjct: 39 SSMPCLNGGSCVEIPGAFKCG 59
>SB_21612| Best HMM Match : Orthoreo_P17 (HMM E-Value=6.9)
Length = 387
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 4 WSSTGMLVPPKXKGTVTYIAPAGNYKVTDVVLETEFDGERQK 129
W + ++ P+ +G T + G K D VL ++ GE+ +
Sbjct: 169 WKTMNAILGPQWEGERTRVPSMGRLKTMDAVLGPQWKGEKTR 210
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,232,615
Number of Sequences: 59808
Number of extensions: 344569
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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