Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0700
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.91 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 139 LQVWPVRQPRPVTEKLPANHPLLTG---QRVLDSL 234
           +Q W  RQP P+ E +    PLL     + +LD L
Sbjct: 484 IQQWTCRQPEPLIELIEHWMPLLPNWILENILDML 518


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 144 LQHAVLLPLTVELRLQHHVGDFVV 73
           L HA    L V   LQ H+G+F++
Sbjct: 195 LSHAEYSMLLVYFHLQRHMGNFLI 218


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 616 VLPLRQLLVEPPGTXXTMP 560
           VL L  +++EPPGT    P
Sbjct: 640 VLTLVWMIIEPPGTRFFYP 658


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 616 VLPLRQLLVEPPGTXXTMP 560
           VL L  +++EPPGT    P
Sbjct: 730 VLTLVWMIIEPPGTRFFYP 748


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,227
Number of Sequences: 438
Number of extensions: 2962
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)