Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0700
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 256 1e-68
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 49 3e-06
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 49 3e-06
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 49 3e-06
At5g57450.2 68418.m07178 DNA repair family protein contains simi... 31 0.56
At5g57450.1 68418.m07177 DNA repair family protein contains simi... 31 0.56
At5g58540.1 68418.m07330 protein kinase family protein contains ... 29 3.0
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 29 3.0
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 3.0
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 29 3.9
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 28 5.2
At1g65800.1 68414.m07467 S-receptor protein kinase, putative sim... 28 6.8
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim... 28 6.8
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 28 6.8
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 9.0
At1g70770.1 68414.m08158 expressed protein 27 9.0
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 256 bits (626), Expect = 1e-68
Identities = 120/165 (72%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
Frame = +1
Query: 25 VPPKXKGTVTYIAPAGNYKVTDVVLETEFDGERQKYSMLQVWPVRQPRPVTEKLPANHPL 204
+PP G +TYIAPAG Y + D V+E EF G ++ Y+MLQ WPVR PRPV KL A+ PL
Sbjct: 170 LPPDAMGKITYIAPAGQYSLKDTVIELEFQGIKKSYTMLQSWPVRTPRPVASKLAADTPL 229
Query: 205 LTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEV 384
LTGQRVLD+LFP V GGT AIPGAFGCGKTVISQALSKYSNSD ++YVGCGERGNEM+EV
Sbjct: 230 LTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEV 289
Query: 385 LRDFPELTVEI-EGVTESIMKRTALVANTSNMPVAAREASIYTGI 516
L DFP+LT+ + +G ES+MKRT LVANTSNMPVAAREASIYTGI
Sbjct: 290 LMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI 334
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/58 (53%), Positives = 33/58 (56%)
Frame = +3
Query: 525 GDFSDPVTAATLGIVXXVPXXXXXXXXXXXXFPSINWLISYSKYMRALRRLLREKLPP 698
GDFSDPVT+ATL IV V FPS+NWLISYSKY AL EK P
Sbjct: 418 GDFSDPVTSATLSIVQ-VFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EKFDP 473
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +2
Query: 581 WGLDKKLAQRKHFP 622
WGLDKKLAQRKHFP
Sbjct: 436 WGLDKKLAQRKHFP 449
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 49.2 bits (112), Expect = 3e-06
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Frame = +1
Query: 118 ERQKYSMLQVWPVRQPRPVTEKLPANHPLL-TGQRVLDSLFPCVQGGTTAIPGAFGCGKT 294
ER + P+ + P L +L TG +V+D L P +GG + G G GKT
Sbjct: 179 ERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKT 238
Query: 295 VISQALSK---YSNSDVIIYVGCGERGNEMSEVLRDFPELTVEIEGVTESIMKRTALVAN 465
V+ L ++ ++ G GER E +++ R+ E V G +S K ALV
Sbjct: 239 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESK-CALVYG 297
Query: 466 TSNMPVAAREASIYTGI 516
N P AR TG+
Sbjct: 298 QMNEPPGARARVGLTGL 314
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 49.2 bits (112), Expect = 3e-06
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Frame = +1
Query: 118 ERQKYSMLQVWPVRQPRPVTEKLPANHPLL-TGQRVLDSLFPCVQGGTTAIPGAFGCGKT 294
ER + P+ + P L +L TG +V+D L P +GG + G G GKT
Sbjct: 182 ERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKT 241
Query: 295 VISQALSK---YSNSDVIIYVGCGERGNEMSEVLRDFPELTVEIEGVTESIMKRTALVAN 465
V+ L ++ ++ G GER E +++ R+ E V G +S K ALV
Sbjct: 242 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESK-CALVYG 300
Query: 466 TSNMPVAAREASIYTGI 516
N P AR TG+
Sbjct: 301 QMNEPPGARARVGLTGL 317
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 49.2 bits (112), Expect = 3e-06
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Frame = +1
Query: 118 ERQKYSMLQVWPVRQPRPVTEKLPANHPLL-TGQRVLDSLFPCVQGGTTAIPGAFGCGKT 294
ER + P+ + P L +L TG +V+D L P +GG + G G GKT
Sbjct: 179 ERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKT 238
Query: 295 VISQALSK---YSNSDVIIYVGCGERGNEMSEVLRDFPELTVEIEGVTESIMKRTALVAN 465
V+ L ++ ++ G GER E +++ R+ E V G +S K ALV
Sbjct: 239 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESK-CALVYG 297
Query: 466 TSNMPVAAREASIYTGI 516
N P AR TG+
Sbjct: 298 QMNEPPGARARVGLTGL 314
>At5g57450.2 68418.m07178 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 160 QPRPVTEKLPANHPLLTGQRVLDSLFPCVQGG-----TTAIPGAFGCGKTVISQALS 315
+P + + P N L TG +LD C++GG T I GCGKT + LS
Sbjct: 7 KPENLLRRSPTNRKLTTGCEILDG---CLRGGISCDSLTEIVAESGCGKTQLCLQLS 60
>At5g57450.1 68418.m07177 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 160 QPRPVTEKLPANHPLLTGQRVLDSLFPCVQGG-----TTAIPGAFGCGKTVISQALS 315
+P + + P N L TG +LD C++GG T I GCGKT + LS
Sbjct: 7 KPENLLRRSPTNRKLTTGCEILDG---CLRGGISCDSLTEIVAESGCGKTQLCLQLS 60
>At5g58540.1 68418.m07330 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 484
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 299 MTVLPQPKAPGMAVVPPCTQGKSESSTRCPVSSGWLAGSFSVT 171
+T LP P AP + PP + G ++ S + + G + G F+V+
Sbjct: 114 ITPLPVPLAPAPSPSPPVSPGTTKKSPKVYMIVGIVGGVFTVS 156
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1
Query: 250 GGTTAIPGAFGCGKTVISQALS-KYSNS----DVIIYVGC 354
G T + G GCGKT + QALS K+S+S + Y GC
Sbjct: 167 GRMTLLLGPPGCGKTTLLQALSGKFSDSVKVGGEVCYNGC 206
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 172 VTEKLPANHPLLTGQRVLDSLFPCVQGGTTAIPGAFGCGKTVIS 303
+ E+ + P+ TG + +DSL P +G + G GKT I+
Sbjct: 408 ILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIA 451
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 250 GGTTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEVL 387
G T + G GCGKT + +ALS +++ Y G+ ++EV+
Sbjct: 165 GRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISYNGHGLNEVV 210
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 418 EGVTESIMKRTALVANTSNMPVAAREAS 501
+G SI+K V N+S++ +AAREAS
Sbjct: 407 QGTPASILKGEGAVVNSSSVLIAAREAS 434
>At1g65800.1 68414.m07467 S-receptor protein kinase, putative
similar to PIR|T05180|T05180 S-receptor kinase ARK3
precursor - [Arabidopsis thaliana]
Length = 847
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 302 EMTVLPQPKAPGMAVVPPCTQGKSESSTR 216
E T +PQPK PG V + S SST+
Sbjct: 801 ETTAIPQPKRPGFCVGRSSLEVDSSSSTQ 829
>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
similar to similar to PIR|T05180|T05180 S-receptor
kinase ARK3 precursor - [Arabidopsis thaliana]
Length = 843
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 302 EMTVLPQPKAPGMAVVPPCTQGKSESSTR 216
E T +PQPK PG + + S SST+
Sbjct: 797 ETTAIPQPKRPGFCIGRSPLEADSSSSTQ 825
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 432 LRHALDLHRQLREVAEHLGHLVT 364
L+HA D++RQ+RE E +G V+
Sbjct: 604 LKHARDIYRQIREHVEQIGFNVS 626
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 85 TDVVLETEFDGERQKYSMLQVWPVRQPRPVTEK 183
T V + EF G+R + S L WP+ + P + K
Sbjct: 414 TFVKMSEEFVGDRMRKSCLNAWPIDRMCPESTK 446
>At1g70770.1 68414.m08158 expressed protein
Length = 610
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 106 EFDGERQKYSMLQVWPVRQPRPVTEKLP 189
+FDG + + L+V V++P+P EK P
Sbjct: 108 DFDGSDDEIATLKVEEVKKPKPKKEKKP 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,542
Number of Sequences: 28952
Number of extensions: 232955
Number of successful extensions: 795
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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