Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0699
(500 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q16II1 Cluster: Tata-box binding protein; n=2; Culicida... 193 2e-48
UniRef50_Q07DP5 Cluster: TRF2; n=16; Coelomata|Rep: TRF2 - Droso... 183 2e-45
UniRef50_UPI00015B4A38 Cluster: PREDICTED: similar to tata-box b... 165 5e-40
UniRef50_UPI00005882B9 Cluster: PREDICTED: similar to ENSANGP000... 147 1e-34
UniRef50_P62380 Cluster: TATA box-binding protein-like protein 1... 146 3e-34
UniRef50_UPI0000DA1BDD Cluster: PREDICTED: similar to TATA box-b... 128 7e-29
UniRef50_P29037 Cluster: TATA-box-binding protein; n=168; Eukary... 95 1e-18
UniRef50_P20226 Cluster: TATA-box-binding protein; n=13; Bilater... 95 1e-18
UniRef50_Q6JAE2 Cluster: TATA-box-binding protein; n=2; Zea mays... 93 2e-18
UniRef50_P20227 Cluster: TATA-box-binding protein; n=7; Eukaryot... 91 1e-17
UniRef50_Q2H1M3 Cluster: Putative uncharacterized protein; n=1; ... 91 2e-17
UniRef50_Q5S251 Cluster: TATA-box-binding protein; n=1; Volvox c... 87 2e-16
UniRef50_Q9XZQ7 Cluster: TBP-like factor; n=3; Caenorhabditis|Re... 87 3e-16
UniRef50_Q9XZP5 Cluster: TBP-like factor; n=1; Brugia malayi|Rep... 82 6e-15
UniRef50_Q27896 Cluster: TBP-related factor; n=4; Diptera|Rep: T... 80 2e-14
UniRef50_A2Z7N4 Cluster: TATA-box-binding protein; n=1; Oryza sa... 65 3e-13
UniRef50_Q00YA0 Cluster: TATA-box-binding protein; n=1; Ostreoco... 71 1e-11
UniRef50_Q5C0N4 Cluster: TATA-box-binding protein; n=1; Schistos... 71 1e-11
UniRef50_P52653 Cluster: TATA-box-binding protein; n=3; Entamoeb... 70 3e-11
UniRef50_Q5CW12 Cluster: TATA-box factor binding protein; n=3; C... 69 4e-11
UniRef50_A7UFC2 Cluster: TBP-related factor; n=3; Entamoeba hist... 66 4e-10
UniRef50_A0CRU8 Cluster: Chromosome undetermined scaffold_25, wh... 66 6e-10
UniRef50_Q3LVY6 Cluster: TATA binding protein of transcription f... 59 5e-08
UniRef50_Q945B3 Cluster: TATA box-binding protein-like protein; ... 55 8e-07
UniRef50_Q91YM5 Cluster: TATA-box-binding protein; n=15; Coeloma... 54 1e-06
UniRef50_Q4N840 Cluster: Transcription initiation factor TFIID, ... 53 3e-06
UniRef50_A0RWZ0 Cluster: TATA-box binding protein (TBP), compone... 50 3e-05
UniRef50_Q9V024 Cluster: TATA-box-binding protein; n=6; Thermoco... 48 1e-04
UniRef50_P32086 Cluster: TATA-box-binding protein; n=6; Plasmodi... 45 0.001
UniRef50_Q8ZVR0 Cluster: TATA-box-binding protein; n=15; Thermop... 44 0.003
UniRef50_Q7RRN4 Cluster: TATA element modulatory factor; n=5; Pl... 43 0.004
UniRef50_A5K0W3 Cluster: Transcription initiation TFIID-like, pu... 43 0.004
UniRef50_Q8TX38 Cluster: TATA-box-binding protein; n=1; Methanop... 42 0.006
UniRef50_Q9YAT1 Cluster: TATA-box-binding protein; n=2; Desulfur... 42 0.008
UniRef50_Q6M0L3 Cluster: TATA-box-binding protein; n=6; Methanoc... 40 0.042
UniRef50_A3CUY3 Cluster: TATA-box binding protein; n=5; Methanom... 39 0.055
UniRef50_Q9HN56 Cluster: TATA-box-binding protein E; n=11; Eurya... 39 0.055
UniRef50_O52018 Cluster: TATA-box-binding protein D; n=26; Eurya... 38 0.13
UniRef50_A2DQT7 Cluster: Putative uncharacterized protein; n=1; ... 37 0.22
UniRef50_UPI00015BAE85 Cluster: TATA binding protein of transcri... 37 0.29
UniRef50_Q4X631 Cluster: Transcription initiation TFIID-like, pu... 33 2.7
UniRef50_UPI000065F62E Cluster: Dolichyl-P-Man:Man(7)GlcNAc(2)-P... 32 8.3
UniRef50_A4FXJ0 Cluster: TATA-box binding protein; n=1; Methanoc... 32 8.3
>UniRef50_Q16II1 Cluster: Tata-box binding protein; n=2;
Culicidae|Rep: Tata-box binding protein - Aedes aegypti
(Yellowfever mosquito)
Length = 584
Score = 193 bits (470), Expect = 2e-48
Identities = 91/128 (71%), Positives = 103/128 (80%), Gaps = 1/128 (0%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
IDI+INNVVCSFSV+CHLNLR IAL G NVEFRRENGMVTMKLRRPYTTASIWSSG++TC
Sbjct: 287 IDIVINNVVCSFSVRCHLNLRDIALKGFNVEFRRENGMVTMKLRRPYTTASIWSSGKITC 346
Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-REA 435
TGATSE QAK+AARRY+R LQKLGF LGTC MP+ I I++FS+KY ++A
Sbjct: 347 TGATSEDQAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIVNFSEKYKKDA 406
Query: 436 DYEPXTAP 459
YEP P
Sbjct: 407 SYEPELHP 414
Score = 37.5 bits (83), Expect = 0.17
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 452 LHPGVTYKLHNPKATL 499
LHPGVTYKL+NPKATL
Sbjct: 412 LHPGVTYKLYNPKATL 427
>UniRef50_Q07DP5 Cluster: TRF2; n=16; Coelomata|Rep: TRF2 - Drosophila
melanogaster (Fruit fly)
Length = 1715
Score = 183 bits (445), Expect = 2e-45
Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 1/128 (0%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
+DI+INNVVCSFSV CHL LR+IAL G NVE+RRENGMVTMKLR PYTTASIWSSGR+TC
Sbjct: 1283 LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITC 1342
Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-A 435
TGATSE AK+AARRYAR L KLGF LGTC MP+ I+I++FS+++RE A
Sbjct: 1343 TGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 1402
Query: 436 DYEPXTAP 459
YEP P
Sbjct: 1403 SYEPELHP 1410
>UniRef50_UPI00015B4A38 Cluster: PREDICTED: similar to tata-box
binding protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to tata-box binding protein - Nasonia
vitripennis
Length = 283
Score = 165 bits (401), Expect = 5e-40
Identities = 81/128 (63%), Positives = 97/128 (75%), Gaps = 1/128 (0%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
+DI+I+NVVCSFSV+CHLNLR+IALNG NVE+RRENG+V M+LR+P T ASI SSG+VTC
Sbjct: 59 LDIIISNVVCSFSVRCHLNLREIALNGSNVEYRRENGLVRMRLRKPCTLASISSSGKVTC 118
Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-A 435
TGATSE +AK AARR AR+LQKLGF LGTC MP+ I+I SFS Y++
Sbjct: 119 TGATSEEEAKKAARRCARSLQKLGFRVRFNNYRIVNVLGTCTMPWAIKITSFSTHYKDIV 178
Query: 436 DYEPXTAP 459
YEP P
Sbjct: 179 QYEPEIQP 186
>UniRef50_UPI00005882B9 Cluster: PREDICTED: similar to
ENSANGP00000019042; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000019042
- Strongylocentrotus purpuratus
Length = 325
Score = 147 bits (357), Expect = 1e-34
Identities = 74/128 (57%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
+DI INNVVC+F V+CHLNLR+I G NVE+RRE G V M+ RRP TA+IWSSG++T
Sbjct: 98 VDIYINNVVCAFGVRCHLNLRRIGQYGSNVEYRREYGKVNMRFRRPSATATIWSSGKITI 157
Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYR-EA 435
TG SE AK ARR ARALQKLGF LGTC MPF IRI FS+K++ A
Sbjct: 158 TGNDSEEHAKKNARRCARALQKLGFNVRLSKYKVVNVLGTCSMPFAIRIRDFSEKHQNSA 217
Query: 436 DYEPXTAP 459
YEP P
Sbjct: 218 SYEPELHP 225
Score = 33.1 bits (72), Expect = 3.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 413 SPKNTGKQTMNHXLHPGVTYKLHNPKATL 499
S K+ + LHP VTYKL+ P+ATL
Sbjct: 210 SEKHQNSASYEPELHPAVTYKLYQPRATL 238
>UniRef50_P62380 Cluster: TATA box-binding protein-like protein 1;
n=23; Tetrapoda|Rep: TATA box-binding protein-like
protein 1 - Homo sapiens (Human)
Length = 186
Score = 146 bits (353), Expect = 3e-34
Identities = 70/128 (54%), Positives = 86/128 (67%), Gaps = 1/128 (0%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
+DI+I NVVC F +CHLNLR+IAL G NV ++R+ G V MKLR+P TA+IWSSG++ C
Sbjct: 9 LDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIIC 68
Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYR-EA 435
TGATSE +AK ARR AR+LQKLGF+ L C MPF IR+ F+K R A
Sbjct: 69 TGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHA 128
Query: 436 DYEPXTAP 459
YEP P
Sbjct: 129 SYEPELHP 136
>UniRef50_UPI0000DA1BDD Cluster: PREDICTED: similar to TATA
box-binding protein-like protein 1 (TBP-like protein 1)
(TATA box-binding protein-related factor 2) (TBP-related
factor 2) (21-kDa TBP-like protein); n=2; Rattus
norvegicus|Rep: PREDICTED: similar to TATA box-binding
protein-like protein 1 (TBP-like protein 1) (TATA
box-binding protein-related factor 2) (TBP-related
factor 2) (21-kDa TBP-like protein) - Rattus norvegicus
Length = 363
Score = 128 bits (309), Expect = 7e-29
Identities = 62/114 (54%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Frame = +1
Query: 121 KCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTCTGATSEXQAKIAAR 300
+CHLNLR+IAL G NV ++R+ G V MKLR+P TA+IWSSG++ CTGATSE +AK AR
Sbjct: 166 RCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGAR 225
Query: 301 RYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYR-EADYEPXTAP 459
R AR+LQKLGF+ L C MPF IR+ F+K R A YEP P
Sbjct: 226 RLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHP 279
>UniRef50_P29037 Cluster: TATA-box-binding protein; n=168;
Eukaryota|Rep: TATA-box-binding protein - Mus musculus
(Mouse)
Length = 316
Score = 94.7 bits (225), Expect = 1e-18
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE Q+++AAR+YAR +QKLGF +G+C + F IR+ +++ + YE
Sbjct: 202 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 261
Query: 445 PXTAP 459
P P
Sbjct: 262 PELFP 266
>UniRef50_P20226 Cluster: TATA-box-binding protein; n=13;
Bilateria|Rep: TATA-box-binding protein - Homo sapiens
(Human)
Length = 339
Score = 94.7 bits (225), Expect = 1e-18
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 165 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 224
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE Q+++AAR+YAR +QKLGF +G+C + F IR+ +++ + YE
Sbjct: 225 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 284
Query: 445 PXTAP 459
P P
Sbjct: 285 PELFP 289
>UniRef50_Q6JAE2 Cluster: TATA-box-binding protein; n=2; Zea
mays|Rep: TATA-box-binding protein - Zea mays (Maize)
Length = 392
Score = 93.5 bits (222), Expect = 2e-18
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 97 NVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGATS 273
N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I++SG++ CTGA S
Sbjct: 174 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 233
Query: 274 EXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYEPX 450
E Q+K+AAR+YAR +QKLGF +G+C + F IR+ + + + YEP
Sbjct: 234 EQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 293
Query: 451 TAP 459
P
Sbjct: 294 LFP 296
>UniRef50_P20227 Cluster: TATA-box-binding protein; n=7;
Eukaryota|Rep: TATA-box-binding protein - Drosophila
melanogaster (Fruit fly)
Length = 353
Score = 91.1 bits (216), Expect = 1e-17
Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-READYE 444
SE +++AAR+YAR +QKLGF +G+C + F IR+ + + YE
Sbjct: 239 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 298
Query: 445 PXTAP 459
P P
Sbjct: 299 PELFP 303
>UniRef50_Q2H1M3 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 242
Score = 90.6 bits (215), Expect = 2e-17
Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Frame = +1
Query: 88 MINNVVCSFSVKCHLNLRQIALNGVNVEF-RRENGMVTMKLRRPYTTASIWSSGRVTCTG 264
+I NVV + + C L+LR I+ NVE+ RR+ + M++R P TT ++SSG++ TG
Sbjct: 36 IIQNVVATVDLGCRLDLRLISEQARNVEYNRRKFHALIMRIREPRTTTLVFSSGKMVITG 95
Query: 265 ATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADY 441
A SE AK+AAR++ARALQK GF +G+ F IR+ + YRE A Y
Sbjct: 96 AKSEALAKLAARKHARALQKCGFGTGFSDFKVQNYVGSATCDFLIRLERIAHMYRESAMY 155
Query: 442 EPXTAP 459
EP P
Sbjct: 156 EPELFP 161
>UniRef50_Q5S251 Cluster: TATA-box-binding protein; n=1; Volvox
carteri f. nagariensis|Rep: TATA-box-binding protein -
Volvox carteri f. nagariensis
Length = 340
Score = 87.0 bits (206), Expect = 2e-16
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ NVV + ++ L+L++IA++ N E+ + V M++R P TTA I++SG++ CTGA
Sbjct: 37 LQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 96
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYR-EADYE 444
SE ++ AARRYA+ +QKLGF +G+C + F IR+ + + A YE
Sbjct: 97 KSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSLFASYE 156
Query: 445 PXTAP 459
P P
Sbjct: 157 PELFP 161
>UniRef50_Q9XZQ7 Cluster: TBP-like factor; n=3; Caenorhabditis|Rep:
TBP-like factor - Caenorhabditis elegans
Length = 454
Score = 86.6 bits (205), Expect = 3e-16
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
IDI I NVVC++++ H++LR++A+N NV + RE G++ + R P ++SSG+V
Sbjct: 263 IDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYI 322
Query: 259 TGATSEXQAKIAARRYARALQ----KLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY 426
G SE K AAR AR +Q K L TCR+PF I+I + KY
Sbjct: 323 VGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIKIEEVAAKY 382
Query: 427 -READYEP 447
E+ YEP
Sbjct: 383 PSESTYEP 390
>UniRef50_Q9XZP5 Cluster: TBP-like factor; n=1; Brugia malayi|Rep:
TBP-like factor - Brugia malayi (Filarial nematode worm)
Length = 295
Score = 82.2 bits (194), Expect = 6e-15
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Frame = +1
Query: 70 LQ*IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGR 249
+Q + I NVVC++++ H++L ++ALN NV F R G++ + R P I+SSG+
Sbjct: 44 IQCFEFQIRNVVCNYTLPLHIDLHRVALNSGNVAFDRGRGVLLKQKRNPSCYVKIYSSGK 103
Query: 250 VTCTGATSEXQAKIAARRYARALQ----KLGFEXXXXXXXXXXXLGTCRMPFXIRIISFS 417
+ G SE + K AAR AR +Q K+ L TC+MPF ++I +
Sbjct: 104 IYIVGCRSESECKRAARGVARMVQKTMGKMMDVVRIRNYRVCNVLATCKMPFGVKIEELA 163
Query: 418 KKYRE-ADYEP 447
+KY + + YEP
Sbjct: 164 QKYPDCSQYEP 174
>UniRef50_Q27896 Cluster: TBP-related factor; n=4; Diptera|Rep:
TBP-related factor - Drosophila melanogaster (Fruit fly)
Length = 224
Score = 80.2 bits (189), Expect = 2e-14
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Frame = +1
Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEF--RRENGMVTMKLRRPYTTASIWSSGRVT 255
+I + N+V +FSV C L+L+ I N E+ +R G++ M++ P TA I+ +G+V
Sbjct: 48 EIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI-MRMHSPRCTALIFRTGKVI 106
Query: 256 CTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE- 432
CTGA +E +A I +R++AR LQKLGF + T + F IR+ + + + +
Sbjct: 107 CTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQF 166
Query: 433 ADYEPXTAP 459
+ YEP P
Sbjct: 167 SSYEPEMFP 175
>UniRef50_A2Z7N4 Cluster: TATA-box-binding protein; n=1; Oryza
sativa (indica cultivar-group)|Rep: TATA-box-binding
protein - Oryza sativa subsp. indica (Rice)
Length = 264
Score = 64.9 bits (151), Expect(2) = 3e-13
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L++IAL N E+ + V M++R P TTA I++SG++ CTGA
Sbjct: 49 LQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 108
Query: 268 TSEXQAKIAARR 303
SE +K+AAR+
Sbjct: 109 KSEDHSKLAARK 120
Score = 31.9 bits (69), Expect(2) = 3e-13
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 301 RYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYEPXTAP 459
+YAR +QKLGF +G+C + F IR+ + + + YEP P
Sbjct: 158 QYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFP 211
>UniRef50_Q00YA0 Cluster: TATA-box-binding protein; n=1;
Ostreococcus tauri|Rep: TATA-box-binding protein -
Ostreococcus tauri
Length = 258
Score = 71.3 bits (167), Expect = 1e-11
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 23/149 (15%)
Frame = +1
Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEF------------------RRENGM----V 195
D + N+V + ++ C L+L+ IA + NVE+ R EN
Sbjct: 46 DDVRRNIVATVNLDCKLDLKTIAFHARNVEYNPKVRRATRAPTLGEPTRRDENDFRFAAA 105
Query: 196 TMKLRRPYTTASIWSSGRVTCTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLG 375
M++R P TTA I+SSG++ CTGA +E A+ AAR+YA+ + KLGF +G
Sbjct: 106 IMRIRNPKTTALIFSSGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVG 165
Query: 376 TCRMPFXIRIISFSKKYRE-ADYEPXTAP 459
+C + F IR+ + ++ A YEP P
Sbjct: 166 SCDVQFPIRLEGLAWQHGHFAQYEPELFP 194
>UniRef50_Q5C0N4 Cluster: TATA-box-binding protein; n=1; Schistosoma
japonicum|Rep: TATA-box-binding protein - Schistosoma
japonicum (Blood fluke)
Length = 227
Score = 70.9 bits (166), Expect = 1e-11
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Frame = +1
Query: 88 MINNVVCSFSVKCHLNLRQIALNGVNVEF--RRENGMVTMKLRRPYTTASIWSSGRVTCT 261
+I+N+V + + C + LR++ L+ + E+ RR G+V ++LR P T ++ +GR+ CT
Sbjct: 52 VIHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGVV-IRLREPRVTCLVFGTGRMVCT 110
Query: 262 GATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-AD 438
GA SE A + +R+ AR +QKLGF+ +G + F +R+ +
Sbjct: 111 GARSEADANLGSRKCARIIQKLGFDVKFMNFTIQNMVGLADLRFPVRLEGVQLANEQMTQ 170
Query: 439 YEPXTAP 459
YEP P
Sbjct: 171 YEPEIFP 177
>UniRef50_P52653 Cluster: TATA-box-binding protein; n=3; Entamoeba
histolytica|Rep: TATA-box-binding protein - Entamoeba
histolytica
Length = 234
Score = 69.7 bits (163), Expect = 3e-11
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEF--RRENGMVTMKLRRPYTTASIWSSGRVTCTG 264
I NVV +F + L LR+I N E+ +R G + M++ P +TA I+ +G++ CTG
Sbjct: 56 IVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAI-MRISSPKSTALIFQTGKIVCTG 114
Query: 265 ATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADY 441
S ++KIA+++YA+ ++K+G+ +G+C + F I + + Y Y
Sbjct: 115 TRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSYLAFCQY 174
Query: 442 EPXTAP 459
EP P
Sbjct: 175 EPEVFP 180
>UniRef50_Q5CW12 Cluster: TATA-box factor binding protein; n=3;
Cryptosporidium|Rep: TATA-box factor binding protein -
Cryptosporidium parvum Iowa II
Length = 249
Score = 69.3 bits (162), Expect = 4e-11
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFR-RENGMVTMKLRRPYTTASIWSSGRVTCTGA 267
I N++ S ++C L+LR IA++ N E+ ++ V M+LR P T ++ SGR+ TGA
Sbjct: 72 IQNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMITGA 131
Query: 268 TSEXQAKIAARRYARALQKLGF-EXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADY 441
E AK+ ++ A+ QK GF + + T F IR+ + +R+ +Y
Sbjct: 132 RLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDFCNY 191
Query: 442 EPXTAP 459
EP P
Sbjct: 192 EPELFP 197
>UniRef50_A7UFC2 Cluster: TBP-related factor; n=3; Entamoeba
histolytica|Rep: TBP-related factor - Entamoeba
histolytica
Length = 216
Score = 66.1 bits (154), Expect = 4e-10
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Frame = +1
Query: 88 MINNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTG 264
+I N+V + + C +NL+ + N E+ + G + +++ P TTA ++ SG++ TG
Sbjct: 40 VIQNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVTG 99
Query: 265 ATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXI---RIISFSKKYREA 435
+ +++A R+YAR LQ+LG+ + +C M F I +I + K +
Sbjct: 100 GKTVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITK- 158
Query: 436 DYEPXTAP 459
YEP P
Sbjct: 159 -YEPEIFP 165
>UniRef50_A0CRU8 Cluster: Chromosome undetermined scaffold_25, whole
genome shotgun sequence; n=2; Eukaryota|Rep: Chromosome
undetermined scaffold_25, whole genome shotgun sequence
- Paramecium tetraurelia
Length = 201
Score = 65.7 bits (153), Expect = 6e-10
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
I NVV + + LNL I+ E+ + V M+L P TTA I+ SG++ CTGA
Sbjct: 27 IQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLSNPSTTALIFQSGKMVCTGA 86
Query: 268 TSEXQAKIAARRYARALQKLGF 333
SE Q+ IAAR+YA+ + KLGF
Sbjct: 87 KSEDQSLIAARKYAKIINKLGF 108
>UniRef50_Q3LVY6 Cluster: TATA binding protein of transcription
factor IID; n=1; Bigelowiella natans|Rep: TATA binding
protein of transcription factor IID - Bigelowiella
natans (Pedinomonas minutissima) (Chlorarachnion
sp.(strain CCMP 621))
Length = 204
Score = 59.3 bits (137), Expect = 5e-08
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 67 RLQ*IDIMINNVVCSFSVKCHLNLRQIALNGVNVEF--RRENGMVTMKLRRPYTTASIWS 240
RL I I+NVV S + L+L++IAL N EF +R +G++ M+ R P TA ++
Sbjct: 12 RLGDIAYKIHNVVLSVRLDSILDLKKIALRSKNTEFNSKRFHGLI-MRSRDPKATAIVFK 70
Query: 241 SGRVTCTGATSEXQAKIAARRYARALQKLGF 333
SG + CTGA SE K A ++ + ++ GF
Sbjct: 71 SGSMICTGAKSEKDGKEAILKFVKIIRNAGF 101
>UniRef50_Q945B3 Cluster: TATA box-binding protein-like protein;
n=1; Crypthecodinium cohnii|Rep: TATA box-binding
protein-like protein - Crypthecodinium cohnii
(Dinoflagellate)
Length = 220
Score = 55.2 bits (127), Expect = 8e-07
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Frame = +1
Query: 100 VVCSFSVKCHLNLRQIALNGVNVEFR-RENGMVTMKLRRPYTTASIWSSGRVTCTGATSE 276
++ F+++C ++LRQ+A + E+ R++ +T++L P TA + SSG V+ TG
Sbjct: 48 IMAKFNLRCEIDLRQLAFALRHAEYNPRKHSSLTLRLVEPRATAMVRSSGVVSITGVLDL 107
Query: 277 XQAKIAARRYARALQKLG---FEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-READYE 444
+ K +A++ AR +Q+ G + L M F IR+ + K+ R A YE
Sbjct: 108 DELKQSAKKVARLVQRSGEGHEKVKFAGFTICSILAKASMGFPIRLDQLAAKWRRNALYE 167
Query: 445 P 447
P
Sbjct: 168 P 168
>UniRef50_Q91YM5 Cluster: TATA-box-binding protein; n=15;
Coelomata|Rep: TATA-box-binding protein - Mus musculus
(Mouse)
Length = 260
Score = 54.4 bits (125), Expect = 1e-06
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 268 TS 273
S
Sbjct: 202 KS 203
>UniRef50_Q4N840 Cluster: Transcription initiation factor TFIID,
putative; n=2; Theileria|Rep: Transcription initiation
factor TFIID, putative - Theileria parva
Length = 222
Score = 53.2 bits (122), Expect = 3e-06
Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Frame = +1
Query: 88 MINNVVCSFSVKCHLNLRQIALNGVNVEFR-RENGMVTMKLRRPYTTASIWSSGRVTCTG 264
M+ N+V S + L+LR+IA++ N E+ ++ + ++++ P T I+ +GR+ TG
Sbjct: 45 MVQNIVASVHLGEELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRIIITG 104
Query: 265 ATSEXQAKIAARRYARALQK-LGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-AD 438
+ + ++ +R A+ ++K G + + T IR+ FS+++++ +
Sbjct: 105 SKTIEDTRLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLCN 164
Query: 439 YEP 447
YEP
Sbjct: 165 YEP 167
>UniRef50_A0RWZ0 Cluster: TATA-box binding protein (TBP), component
of TFIID and TFIIIB; n=4; Thermoprotei|Rep: TATA-box
binding protein (TBP), component of TFIID and TFIIIB -
Cenarchaeum symbiosum
Length = 186
Score = 50.0 bits (114), Expect = 3e-05
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 85 IMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN--GMVTMKLRRPYTTASIWSSGRVTC 258
I + NVV S SV ++L +I +VE+ + G+V +L+ P T I++SG++ C
Sbjct: 8 ISVENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLV-FRLKSPKTATLIFTSGKMVC 66
Query: 259 TGATSEXQAKIAARRYARALQKLGFE 336
TG+ SE A+ A + + L+K G +
Sbjct: 67 TGSKSEEMARKAVKTVVQKLRKGGIK 92
>UniRef50_Q9V024 Cluster: TATA-box-binding protein; n=6;
Thermococcaceae|Rep: TATA-box-binding protein -
Pyrococcus abyssi
Length = 191
Score = 48.0 bits (109), Expect = 1e-04
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 85 IMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGM-VTMKLRRPYTTASIWSSGRVTCT 261
I I N+V S + NL +AL N E+ E V +++ P ++SSG++ C+
Sbjct: 100 IDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCS 159
Query: 262 GATSEXQAKIAARRYARALQKLG 330
GA SE A A R+ R L+K G
Sbjct: 160 GAKSEADAWEAVRKLLRELEKYG 182
>UniRef50_P32086 Cluster: TATA-box-binding protein; n=6;
Plasmodium|Rep: TATA-box-binding protein - Plasmodium
falciparum
Length = 228
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVT 255
I + I+N++ S ++ +NLR +A++ N E+ + ++L +P TA I+ +GR+
Sbjct: 48 ISLNIHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIM 107
Query: 256 CTGATSEXQAKIAARRYARALQ---KLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY 426
TG ++ + + ++ A+ ++ K + C +P + +++ K
Sbjct: 108 LTGTRTKKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHK- 166
Query: 427 READYEP 447
+YEP
Sbjct: 167 EYCNYEP 173
>UniRef50_Q8ZVR0 Cluster: TATA-box-binding protein; n=15;
Thermoprotei|Rep: TATA-box-binding protein - Pyrobaculum
aerophilum
Length = 199
Score = 43.6 bits (98), Expect = 0.003
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +1
Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN--GMVTMKLRRPYTTASIWSSGRVT 255
++ I N+V S ++ ++L Q L N + E G++ ++ P I+ SG++
Sbjct: 98 EVQIQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLI-YRMSSPRVVILIFGSGKIV 156
Query: 256 CTGATSEXQAKIAARRYARALQKLG 330
CTGA SE A ++ L++LG
Sbjct: 157 CTGAKSEKDVATAVQKLYNQLKELG 181
>UniRef50_Q7RRN4 Cluster: TATA element modulatory factor; n=5;
Plasmodium|Rep: TATA element modulatory factor -
Plasmodium yoelii yoelii
Length = 382
Score = 42.7 bits (96), Expect = 0.004
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 229 SIWSSGRVTCTGATSEXQAKIAARRYARALQKLGFE-XXXXXXXXXXXLGTCRMPFXIRI 405
SI+S+G++ CTG S KIA ++ + L++L F+ L + F I +
Sbjct: 220 SIFSNGKIICTGNNSIEACKIAMKKVEKKLKQLNFKNIKLKKIAITNILAVYNVGFSIVL 279
Query: 406 ISFSKKYREADYEPXTAP 459
F++ Y+ DY+P P
Sbjct: 280 PLFAQYYKSVDYDPNVFP 297
>UniRef50_A5K0W3 Cluster: Transcription initiation TFIID-like,
putative; n=1; Plasmodium vivax|Rep: Transcription
initiation TFIID-like, putative - Plasmodium vivax
Length = 334
Score = 42.7 bits (96), Expect = 0.004
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 229 SIWSSGRVTCTGATSEXQAKIAARRYARALQKLGFE-XXXXXXXXXXXLGTCRMPFXIRI 405
SI+++G++ CTG S KIA ++ R L++L F+ L + F I +
Sbjct: 172 SIFANGKIICTGNNSIEACKIAMKKIERKLKQLNFKNISIKNVTITNILAVYNVGFSIVL 231
Query: 406 ISFSKKYREADYEPXTAP 459
F++ Y+ DY+P P
Sbjct: 232 PLFAQYYKSVDYDPNVFP 249
>UniRef50_Q8TX38 Cluster: TATA-box-binding protein; n=1;
Methanopyrus kandleri|Rep: TATA-box-binding protein -
Methanopyrus kandleri
Length = 185
Score = 42.3 bits (95), Expect = 0.006
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = +1
Query: 82 DIMINNVVCSFSVKCHLNLRQIA--------LNGVNVEFRRENGMVTMKLRRPYTTASIW 237
++ I N+V S L+L IA + G+ E + G+V ++LR P ++
Sbjct: 91 EVEIQNIVASIDFHVPLDLDTIAEVLVGDEDVEGIEYEPEQFPGLV-LRLREPKVAMLLF 149
Query: 238 SSGRVTCTGATSEXQAKIAARRYARALQKLGFE 336
SG+ CTGA +E + + A ++ A ++K G +
Sbjct: 150 YSGKAVCTGAKTEEEPEKAVKKIAEKIEKYGLK 182
Score = 32.7 bits (71), Expect = 4.8
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQ--IALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTCTG 264
I N+V S +K +NL + + L G E + G+V +L T I+ SG++ CTG
Sbjct: 3 IQNIVASVDLKGEVNLDECSVILQG-EYEPEQFPGLV-YRLEDIGTVVLIFRSGKMVCTG 60
Query: 265 ATSEXQAKIAARRYARALQK 324
A + Q + R L+K
Sbjct: 61 AKNREQIYKSVERVREDLEK 80
>UniRef50_Q9YAT1 Cluster: TATA-box-binding protein; n=2;
Desulfurococcales|Rep: TATA-box-binding protein -
Aeropyrum pernix
Length = 203
Score = 41.9 bits (94), Expect = 0.008
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 85 IMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN--GMVTMKLRRPYTTASIWSSGRVTC 258
I I N+V S ++K +++L + AL N + E G++ ++ P I+SSG++
Sbjct: 114 IQIQNIVASANLKVYIDLEKAALEFENSLYEPEQFPGLI-YRMDEPRVVMLIFSSGKMVI 172
Query: 259 TGATSEXQAKIAARRYARALQK 324
TGA E + A ++ AR L++
Sbjct: 173 TGAKMENEVYDAVKKVARKLKE 194
Score = 32.3 bits (70), Expect = 6.3
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN--GMVTMKLRRPYTTASIWSSGRVT 255
++ I N+V + ++ L+L I +V++ + G+V +L P T I+ SG++
Sbjct: 22 EVKIENIVATVILENQLDLNLIETKIQDVDYNPDQFPGLV-YRLESPRVTVLIFKSGKMV 80
Query: 256 CTGATSEXQAKIAARRYARALQKLG 330
TGA S Q ++ +A G
Sbjct: 81 ITGAKSINQLIHVVKKLLKAFADQG 105
>UniRef50_Q6M0L3 Cluster: TATA-box-binding protein; n=6;
Methanococcaceae|Rep: TATA-box-binding protein -
Methanococcus maripaludis
Length = 181
Score = 39.5 bits (88), Expect = 0.042
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN--GMVTMKLRRPYTTASIWSSGRVT 255
+I + NVV S + ++L A N E+ E G+V +L P I+ SG++
Sbjct: 4 EIKVVNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVC-RLSEPKVALLIFRSGKLN 62
Query: 256 CTGATSEXQAKIAARRYARALQKLGFE 336
CTGA + A IA + + L++ G +
Sbjct: 63 CTGARCKEDAVIAINKIVKELKEAGMD 89
>UniRef50_A3CUY3 Cluster: TATA-box binding protein; n=5;
Methanomicrobiales|Rep: TATA-box binding protein -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 193
Score = 39.1 bits (87), Expect = 0.055
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = +1
Query: 85 IMINNVVCSFSVKCHLNLRQ--IALNGVNVEFRREN--GMVTMKLRRPYTTASIWSSGRV 252
+ + N+VCS+ + ++NL + I LN N+E+ E G+V ++ P A ++SSG++
Sbjct: 109 VAVTNIVCSYDMGKYINLNKVVITLNLENIEYEPEQFPGLV-YRIEDPKIVALLFSSGKI 167
Query: 253 TCTGATSEXQAK 288
TG + K
Sbjct: 168 ILTGGKTVEDIK 179
>UniRef50_Q9HN56 Cluster: TATA-box-binding protein E; n=11;
Euryarchaeota|Rep: TATA-box-binding protein E -
Halobacterium salinarium (Halobacterium halobium)
Length = 186
Score = 39.1 bits (87), Expect = 0.055
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +1
Query: 82 DIMINNVVCSFSVKCHLNLRQIALN-GV-NVEFRREN--GMVTMKLRRPYTTASIWSSGR 249
+I++ N+V S + LNL IA+ G+ N+E+ E G+V +L P A ++ SG+
Sbjct: 98 EIVVQNIVTSADLGRQLNLNAIAIGLGLENIEYEPEQFPGLV-YRLDDPEVVALLFGSGK 156
Query: 250 VTCTGATSEXQAKIAARRYARALQKLG 330
+ TG A+ A + L++LG
Sbjct: 157 LVITGGKEPKDAEHAVDKITSRLEELG 183
Score = 37.5 bits (83), Expect = 0.17
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Frame = +1
Query: 85 IMINNVVCSFSVKCHLNLRQIA--LNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
I I NVV S + L+L+ +A L G + + + G+V + + P + A I+ SG++ C
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLV-YRTQDPKSAALIFRSGKIVC 66
Query: 259 TGATSEXQAKIAARRYARALQKLGFE 336
TGA S + R L++L +
Sbjct: 67 TGAKSTDDVHESLRIVFDKLRELSIK 92
>UniRef50_O52018 Cluster: TATA-box-binding protein D; n=26;
Euryarchaeota|Rep: TATA-box-binding protein D -
Halobacterium salinarium (Halobacterium halobium)
Length = 186
Score = 37.9 bits (84), Expect = 0.13
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 4/129 (3%)
Frame = +1
Query: 85 IMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGM-VTMKLRRPYTTASIWSSGRVTCT 261
I I NVV S + L L Q+A + E+ + V +L P + I+ SG+ CT
Sbjct: 8 IQIENVVASTDLSQELALEQLATDLPGAEYNPGDFPGVIYRLDDPKSATLIFDSGKAVCT 67
Query: 262 GATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXL---GTCRMPFXIRIISFSKKYRE 432
GA S A L+ LG + + G+ + I+ +
Sbjct: 68 GAQSVDDVHDAISIVVEDLRDLGIDIPPSPPVHVQNIVCSGSLDQDLNLNAIAIGLGLED 127
Query: 433 ADYEPXTAP 459
+YEP P
Sbjct: 128 VEYEPEQFP 136
>UniRef50_A2DQT7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 235
Score = 37.1 bits (82), Expect = 0.22
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMV----TMKLRRPYTTASIWSSGRVTC 258
I N+V + K ++L IA + +++F N + +L P TT I+ SG++
Sbjct: 145 IANMVATMDCKFPIHLESIASSPGHIKFATYNPEIYAGLIYRLASPKTTLMIYVSGKIII 204
Query: 259 TGATSEXQAKIAA 297
TGA SE + K A+
Sbjct: 205 TGAKSEEELKAAS 217
Score = 35.5 bits (78), Expect = 0.68
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Frame = +1
Query: 97 NVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGATS 273
N+V C L+L +I + N E+ T++ + P TA + +G+V G S
Sbjct: 56 NIVACVDYGCKLDLLKITSSTRNSEYNPIRFPAATLRNKEPKATALAFKNGKVNIVGCKS 115
Query: 274 EXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGT---CRMPFXIRIISFSKKY-READY 441
A AAR + R + +G + + C+ P + I+ S + + A Y
Sbjct: 116 ADIALKAARCFGRLFKNIGIKDVKIKSFSIANMVATMDCKFPIHLESIASSPGHIKFATY 175
Query: 442 EP 447
P
Sbjct: 176 NP 177
>UniRef50_UPI00015BAE85 Cluster: TATA binding protein of
transcription factor TFIID; n=1; Ignicoccus hospitalis
KIN4/I|Rep: TATA binding protein of transcription factor
TFIID - Ignicoccus hospitalis KIN4/I
Length = 207
Score = 36.7 bits (81), Expect = 0.29
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +1
Query: 85 IMINNVVCSFSVKCHLNLRQIALN-GVNVEFRREN--GMVTMKLRRPYTTASIWSSGRVT 255
I I N+V + S+ +++L +I NVE+ + G++ +L P TA I+ SG++
Sbjct: 11 IKIENIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLI-FRLEEPRVTALIFKSGKMV 69
Query: 256 CTGATSEXQAKIAARRYARALQKLG 330
TGA S + A ++ L+ G
Sbjct: 70 VTGAKSTQELITAVKKIFYILKSKG 94
Score = 32.7 bits (71), Expect = 4.8
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 85 IMINNVVCS--FSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
I I N+V S V+ HL L E + G++ +L P ++SSG++
Sbjct: 104 IQIQNIVASANLGVEVHLEKAAYLLENSMYEPEQFPGLI-YRLDEPRVVLLLFSSGKMVV 162
Query: 259 TGATSEXQAKIAARRYARALQKLG 330
TGA E + A + + L++ G
Sbjct: 163 TGAKKEEEVSKAVEKVFQNLKEKG 186
>UniRef50_Q4X631 Cluster: Transcription initiation TFIID-like,
putative; n=1; Plasmodium chabaudi|Rep: Transcription
initiation TFIID-like, putative - Plasmodium chabaudi
Length = 228
Score = 33.5 bits (73), Expect = 2.7
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 229 SIWSSGRVTCTGATSEXQAKIAARRYARALQKLGFE 336
SI+S+G++ CTG S KIA ++ + L++L F+
Sbjct: 159 SIFSNGKIICTGNNSIEACKIAMKKVEKKLKQLNFK 194
>UniRef50_UPI000065F62E Cluster:
Dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,6-
mannosyltransferase (EC 2.4.1.-) (Mannosyltransferase
ALG12 homolog) (hALG12) (Membrane protein SB87).; n=1;
Takifugu rubripes|Rep:
Dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,6-
mannosyltransferase (EC 2.4.1.-) (Mannosyltransferase
ALG12 homolog) (hALG12) (Membrane protein SB87). -
Takifugu rubripes
Length = 501
Score = 31.9 bits (69), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 186 ILTSKFYINTIQCNLSQVQVALNTKTAHDIVYHDIN 79
+L S ++ + C S+V+ + N + HDI+YH +N
Sbjct: 4 LLISVALLHLLICPFSKVEESFNLQATHDILYHRVN 39
>UniRef50_A4FXJ0 Cluster: TATA-box binding protein; n=1;
Methanococcus maripaludis|Rep: TATA-box binding protein
- Methanococcus maripaludis
Length = 174
Score = 31.9 bits (69), Expect = 8.3
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Frame = +1
Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRP--YTTASIWSSGRVT 255
+I I NVV S +K +NL +I N E+ E + +R P +I+ SG++
Sbjct: 5 EINIVNVVGSCDLKTPMNLEKIYPLIENSEYDPER-YHCIYIRTPGIKRLVTIFKSGKLN 63
Query: 256 CTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYREA 435
G+ S +AK A L +LGF + + S+ + A
Sbjct: 64 TAGSKSIEEAKSAVLEIVDKLNELGFTDKRPEVKIYNIVANISFNKKFDLEEISENF-GA 122
Query: 436 DYEPXTAP 459
+YEP P
Sbjct: 123 EYEPEQFP 130
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 427,324,465
Number of Sequences: 1657284
Number of extensions: 7029661
Number of successful extensions: 16611
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 16220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16596
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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