Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0699
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    83   2e-17
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    25   4.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   4.8  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    25   8.4  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   8.4  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   8.4  

>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
 Frame = +1

Query: 91  INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
           + N+V + ++ C L+L+ IAL+  N E+  +    V M++R P +TA I++SG++   G 
Sbjct: 58  LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASGKMVVLGG 117

Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
            SE  +K+A+R+YAR +QKLGF            +G+C + F IR+   +  +   + YE
Sbjct: 118 KSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSHGTFSSYE 177

Query: 445 PXTAP 459
           P   P
Sbjct: 178 PELFP 182


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 489 LGLCSL*VTPGCSXWFIVCFPVFF 418
           LG+ +L    G S W I+ FP+ F
Sbjct: 225 LGIATLQALKGTSIWAILLFPIVF 248


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 186 WDGNDEVAPAVHDGFDLVVRTRDVHGR 266
           W G D     VHD FDL    +D++ R
Sbjct: 693 WRGKDYSNARVHDFFDLTEPYKDMYDR 719


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 355 ESCGSALQSRVSVRRVHNVEQQSSLDXHWW 266
           +SC SA ++  S + + NVEQQ +   H+W
Sbjct: 108 QSCKSACEN--SSQSLLNVEQQYAQQVHFW 135


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 173 FDVRMGW*R*SCAGRTRRLRFG 238
           F + +GW   SCAG T++L  G
Sbjct: 423 FIISLGWTTASCAGYTKKLTRG 444


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 435 CFPVFFGERYDPYXKWHSTCS*YIDYTKVAEAHFKAEFL 319
           CFP+F  + Y P  +  +  S ++++ +V  A   ++ L
Sbjct: 282 CFPIFVVKGYFPQLQLKNVLSSFLEFLEVTPAASVSDML 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,593
Number of Sequences: 5004
Number of extensions: 30470
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)