Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0699
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0891 + 24065001-24065101,24065260-24065345,24065902-240659... 93 9e-20
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 92 2e-19
03_05_0548 + 25439649-25439734,25440712-25440799,25441160-254412... 82 2e-16
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421... 29 2.8
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 28 4.8
12_01_1079 - 11223247-11223336,11223606-11223717,11224743-112248... 27 8.5
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 27 8.5
>12_02_0891 +
24065001-24065101,24065260-24065345,24065902-24065965,
24066137-24066224,24066810-24066881,24067821-24067871,
24067940-24067984,24068086-24068178,24068265-24068366,
24068442-24068515,24068540-24068579
Length = 271
Score = 93.5 bits (222), Expect = 9e-20
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Frame = +1
Query: 97 NVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGATS 273
N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I++SG++ CTGA S
Sbjct: 85 NIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKS 144
Query: 274 EXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYEPX 450
E Q+K+AAR+YAR +QKLGF +G+C + F IR+ + + + YEP
Sbjct: 145 EQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPE 204
Query: 451 TAP 459
P
Sbjct: 205 LFP 207
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 92.3 bits (219), Expect = 2e-19
Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L++IAL N E+ + V M++R P TTA I++SG++ CTGA
Sbjct: 47 LQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 106
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE +K+AAR+YAR +QKLGF +G+C + F IR+ + + + YE
Sbjct: 107 KSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 166
Query: 445 PXTAP 459
P P
Sbjct: 167 PELFP 171
>03_05_0548 +
25439649-25439734,25440712-25440799,25441160-25441204,
25441407-25441478,25442402-25442452,25442527-25442571,
25442670-25442762,25442848-25442949,25443024-25443097,
25443130-25443160
Length = 228
Score = 82.2 bits (194), Expect = 2e-16
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 17/140 (12%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN----------------GMVTMKLRRPYT 222
+ N+V + ++ C L+L+ IAL N E+ + V M++R P T
Sbjct: 28 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKTQHEVLGDFVTICNIRFAAVIMRIREPKT 87
Query: 223 TASIWSSGRVTCTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIR 402
TA I++SG++ CTGA SE Q+K+AAR+YAR +QKLGF +G+C + F IR
Sbjct: 88 TALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIR 147
Query: 403 IISFSKKYRE-ADYEPXTAP 459
+ + + + YEP P
Sbjct: 148 LEGLAYSHGAFSSYEPELFP 167
>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
21742227-21742292,21743213-21743371,21743573-21743609,
21743757-21744194,21744735-21744817,21744920-21744956,
21745146-21745214,21745316-21745407,21745481-21745565,
21745903-21745982,21746327-21746724,21746813-21747717,
21747825-21747915,21748617-21750680,21750681-21750749,
21750850-21751273,21751644-21751763
Length = 1832
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 313 RVHNVEQQSSLDXHWWRPCTSRVLTTKSKPSCTA 212
R+ ++QQ+ + H+ +V TKSKP+C A
Sbjct: 1457 RLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNA 1490
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 361 LHESCGSALQSRVSVRRVHNVEQQSSLDXHWWRPCTSRVLTT----KSKPSC 218
+HES G AL S ++ + QQ++ H W R+ T K+K C
Sbjct: 61 VHESAGGALSSSFDWSKLAEMAQQAAEGIHTWSSEVERLKTNLTEEKNKNEC 112
>12_01_1079 -
11223247-11223336,11223606-11223717,11224743-11224825,
11226061-11226173,11226261-11226337,11228626-11228719,
11229072-11229160,11230485-11230560,11231637-11231808
Length = 301
Score = 27.1 bits (57), Expect = 8.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 468 VTPGCSXWFIVCF 430
++PG S WF+VCF
Sbjct: 255 ISPGLSFWFLVCF 267
>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 313 RVHNVEQQSSLDXHWWRPCTSRVLTTKSKPSCTA 212
R+ ++Q++ + H+ +V TKSKP+C A
Sbjct: 1558 RLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNA 1591
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,999,003
Number of Sequences: 37544
Number of extensions: 208887
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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