Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0699
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   93   1e-19
SB_36158| Best HMM Match : Glyco_transf_22 (HMM E-Value=0.1)           27   6.6  
SB_4270| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_192| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   6.6  
SB_44217| Best HMM Match : Rpr2 (HMM E-Value=5.4)                      27   6.6  
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)                    27   6.6  

>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
 Frame = +1

Query: 79  IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVT 255
           + +   N+V + ++ C L+L++IAL   N E+  +    V M++R P TTA I+SSG++ 
Sbjct: 279 VQMWCRNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 338

Query: 256 CTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRI 405
           CTGA SE Q+K+AAR+YAR +QKLGF            +G+C + F IR+
Sbjct: 339 CTGAKSEEQSKLAARKYARVVQKLGFPAKFTEFKIQNMVGSCDVKFPIRL 388


>SB_36158| Best HMM Match : Glyco_transf_22 (HMM E-Value=0.1)
          Length = 255

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -3

Query: 186 ILTSKFYINTIQCNLSQVQVALNTKTAHDIVYHDINL 76
           +L     ++ + C  ++V+ + N +  HD++YH  +L
Sbjct: 13  VLVVLITVHIVCCPFTKVEESFNLQATHDLLYHGSDL 49


>SB_4270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 316 RRVHNVEQQSSLDXHWWRPCTSRVLTTKSKPSCT 215
           RRV ++E+        W PCTS V   +S+  C+
Sbjct: 13  RRVEDLEKAVYSRQQVWYPCTSSVGVCRSRADCS 46


>SB_192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 181 ENGMVTMKLRRPYTTASIWSS-GRVTCT 261
           +N MVT +L+  Y TA+ WS  GR T T
Sbjct: 92  KNDMVTARLQYDYDTATTWSRYGRRTVT 119


>SB_44217| Best HMM Match : Rpr2 (HMM E-Value=5.4)
          Length = 106

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 181 ENGMVTMKLRRPYTTASIWSS-GRVTCT 261
           +N MVT +L+  Y TA+ WS  GR T T
Sbjct: 17  KNDMVTARLQYDYDTATTWSRYGRRTVT 44


>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 274  HWWRPCTSRVLTTKSKPSC-TAGATSSLPSHS 182
            HWWR C  R+   KS P   T G T+S  S S
Sbjct: 1060 HWWRDCPVRI--AKSFPQFGTPGTTTSSTSAS 1089


>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
          Length = 1358

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 85  IMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLR 210
           + I  +  S  +KC      ++LNG NV F+ ++G  ++KLR
Sbjct: 388 LYIEEIKSSNKIKCVEQC--LSLNGKNVTFKLDSGAESLKLR 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,860
Number of Sequences: 59808
Number of extensions: 251990
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)