BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0699 (500 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein. 183 1e-46 AY069554-1|AAL39699.1| 632|Drosophila melanogaster LD27895p pro... 183 1e-46 AJ238442-1|CAB41475.1| 537|Drosophila melanogaster TBP-like fac... 183 1e-46 AF136569-1|AAD28784.1| 632|Drosophila melanogaster TATA box bin... 183 1e-46 AE014298-1172|AAF46368.2| 632|Drosophila melanogaster CG18009-P... 183 1e-46 AE014298-1171|AAF46369.3| 632|Drosophila melanogaster CG18009-P... 183 1e-46 U35147-1|AAA79092.1| 354|Drosophila melanogaster TATA-box bindi... 91 8e-19 U11718-1|AAA68629.1| 353|Drosophila melanogaster TATA-box bindi... 91 8e-19 M38388-1|AAA28926.1| 353|Drosophila melanogaster TATA-consensus... 91 8e-19 M38082-1|AAA28931.1| 353|Drosophila melanogaster TATA-box bindi... 91 8e-19 AY069663-1|AAL39808.1| 353|Drosophila melanogaster LD44083p pro... 91 8e-19 AE013599-3256|AAF46754.1| 353|Drosophila melanogaster CG9874-PA... 91 8e-19 X70838-1|CAA50186.1| 224|Drosophila melanogaster TBP-related fa... 80 1e-15 X70837-1|CAA50185.1| 224|Drosophila melanogaster TBP-related fa... 80 1e-15 AY128483-1|AAM75076.1| 224|Drosophila melanogaster RE61442p pro... 80 1e-15 AE014134-1392|AAF52600.1| 224|Drosophila melanogaster CG7562-PA... 80 1e-15 >DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein. Length = 1715 Score = 183 bits (445), Expect = 1e-46 Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 1/128 (0%) Frame = +1 Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258 +DI+INNVVCSFSV CHL LR+IAL G NVE+RRENGMVTMKLR PYTTASIWSSGR+TC Sbjct: 1283 LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITC 1342 Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-A 435 TGATSE AK+AARRYAR L KLGF LGTC MP+ I+I++FS+++RE A Sbjct: 1343 TGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 1402 Query: 436 DYEPXTAP 459 YEP P Sbjct: 1403 SYEPELHP 1410 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/18 (72%), Positives = 15/18 (83%), Gaps = 2/18 (11%) Frame = +2 Query: 452 LHPGVTYKLH--NPKATL 499 LHPGVTYK+ +PKATL Sbjct: 1408 LHPGVTYKMRDPDPKATL 1425 >AY069554-1|AAL39699.1| 632|Drosophila melanogaster LD27895p protein. Length = 632 Score = 183 bits (445), Expect = 1e-46 Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 1/128 (0%) Frame = +1 Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258 +DI+INNVVCSFSV CHL LR+IAL G NVE+RRENGMVTMKLR PYTTASIWSSGR+TC Sbjct: 200 LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITC 259 Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-A 435 TGATSE AK+AARRYAR L KLGF LGTC MP+ I+I++FS+++RE A Sbjct: 260 TGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 319 Query: 436 DYEPXTAP 459 YEP P Sbjct: 320 SYEPELHP 327 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/18 (72%), Positives = 15/18 (83%), Gaps = 2/18 (11%) Frame = +2 Query: 452 LHPGVTYKLH--NPKATL 499 LHPGVTYK+ +PKATL Sbjct: 325 LHPGVTYKMRDPDPKATL 342 >AJ238442-1|CAB41475.1| 537|Drosophila melanogaster TBP-like factor protein. Length = 537 Score = 183 bits (445), Expect = 1e-46 Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 1/128 (0%) Frame = +1 Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258 +DI+INNVVCSFSV CHL LR+IAL G NVE+RRENGMVTMKLR PYTTASIWSSGR+TC Sbjct: 105 LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITC 164 Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-A 435 TGATSE AK+AARRYAR L KLGF LGTC MP+ I+I++FS+++RE A Sbjct: 165 TGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 224 Query: 436 DYEPXTAP 459 YEP P Sbjct: 225 SYEPELHP 232 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/18 (72%), Positives = 15/18 (83%), Gaps = 2/18 (11%) Frame = +2 Query: 452 LHPGVTYKLH--NPKATL 499 LHPGVTYK+ +PKATL Sbjct: 230 LHPGVTYKMRDPDPKATL 247 >AF136569-1|AAD28784.1| 632|Drosophila melanogaster TATA box binding protein-relatedfactor 2 protein. Length = 632 Score = 183 bits (445), Expect = 1e-46 Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 1/128 (0%) Frame = +1 Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258 +DI+INNVVCSFSV CHL LR+IAL G NVE+RRENGMVTMKLR PYTTASIWSSGR+TC Sbjct: 200 LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITC 259 Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-A 435 TGATSE AK+AARRYAR L KLGF LGTC MP+ I+I++FS+++RE A Sbjct: 260 TGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 319 Query: 436 DYEPXTAP 459 YEP P Sbjct: 320 SYEPELHP 327 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/18 (72%), Positives = 15/18 (83%), Gaps = 2/18 (11%) Frame = +2 Query: 452 LHPGVTYKLH--NPKATL 499 LHPGVTYK+ +PKATL Sbjct: 325 LHPGVTYKMRDPDPKATL 342 >AE014298-1172|AAF46368.2| 632|Drosophila melanogaster CG18009-PD, isoform D protein. Length = 632 Score = 183 bits (445), Expect = 1e-46 Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 1/128 (0%) Frame = +1 Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258 +DI+INNVVCSFSV CHL LR+IAL G NVE+RRENGMVTMKLR PYTTASIWSSGR+TC Sbjct: 200 LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITC 259 Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-A 435 TGATSE AK+AARRYAR L KLGF LGTC MP+ I+I++FS+++RE A Sbjct: 260 TGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 319 Query: 436 DYEPXTAP 459 YEP P Sbjct: 320 SYEPELHP 327 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/18 (72%), Positives = 15/18 (83%), Gaps = 2/18 (11%) Frame = +2 Query: 452 LHPGVTYKLH--NPKATL 499 LHPGVTYK+ +PKATL Sbjct: 325 LHPGVTYKMRDPDPKATL 342 >AE014298-1171|AAF46369.3| 632|Drosophila melanogaster CG18009-PA, isoform A protein. Length = 632 Score = 183 bits (445), Expect = 1e-46 Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 1/128 (0%) Frame = +1 Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258 +DI+INNVVCSFSV CHL LR+IAL G NVE+RRENGMVTMKLR PYTTASIWSSGR+TC Sbjct: 200 LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTASIWSSGRITC 259 Query: 259 TGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-A 435 TGATSE AK+AARRYAR L KLGF LGTC MP+ I+I++FS+++RE A Sbjct: 260 TGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENA 319 Query: 436 DYEPXTAP 459 YEP P Sbjct: 320 SYEPELHP 327 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/18 (72%), Positives = 15/18 (83%), Gaps = 2/18 (11%) Frame = +2 Query: 452 LHPGVTYKLH--NPKATL 499 LHPGVTYK+ +PKATL Sbjct: 325 LHPGVTYKMRDPDPKATL 342 >U35147-1|AAA79092.1| 354|Drosophila melanogaster TATA-box binding protein protein. Length = 354 Score = 91.1 bits (216), Expect = 8e-19 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Frame = +1 Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267 + N+V + ++ C L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA Sbjct: 180 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 239 Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-READYE 444 SE +++AAR+YAR +QKLGF +G+C + F IR+ + + YE Sbjct: 240 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 299 Query: 445 PXTAP 459 P P Sbjct: 300 PELFP 304 >U11718-1|AAA68629.1| 353|Drosophila melanogaster TATA-box binding protein protein. Length = 353 Score = 91.1 bits (216), Expect = 8e-19 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Frame = +1 Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267 + N+V + ++ C L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA Sbjct: 179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238 Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-READYE 444 SE +++AAR+YAR +QKLGF +G+C + F IR+ + + YE Sbjct: 239 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 298 Query: 445 PXTAP 459 P P Sbjct: 299 PELFP 303 >M38388-1|AAA28926.1| 353|Drosophila melanogaster TATA-consensus-binding transcriptionfactor TFII protein. Length = 353 Score = 91.1 bits (216), Expect = 8e-19 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Frame = +1 Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267 + N+V + ++ C L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA Sbjct: 179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238 Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-READYE 444 SE +++AAR+YAR +QKLGF +G+C + F IR+ + + YE Sbjct: 239 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 298 Query: 445 PXTAP 459 P P Sbjct: 299 PELFP 303 >M38082-1|AAA28931.1| 353|Drosophila melanogaster TATA-box binding protein protein. Length = 353 Score = 91.1 bits (216), Expect = 8e-19 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Frame = +1 Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267 + N+V + ++ C L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA Sbjct: 179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238 Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-READYE 444 SE +++AAR+YAR +QKLGF +G+C + F IR+ + + YE Sbjct: 239 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 298 Query: 445 PXTAP 459 P P Sbjct: 299 PELFP 303 >AY069663-1|AAL39808.1| 353|Drosophila melanogaster LD44083p protein. Length = 353 Score = 91.1 bits (216), Expect = 8e-19 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Frame = +1 Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267 + N+V + ++ C L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA Sbjct: 179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238 Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-READYE 444 SE +++AAR+YAR +QKLGF +G+C + F IR+ + + YE Sbjct: 239 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 298 Query: 445 PXTAP 459 P P Sbjct: 299 PELFP 303 >AE013599-3256|AAF46754.1| 353|Drosophila melanogaster CG9874-PA protein. Length = 353 Score = 91.1 bits (216), Expect = 8e-19 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Frame = +1 Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267 + N+V + ++ C L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA Sbjct: 179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238 Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY-READYE 444 SE +++AAR+YAR +QKLGF +G+C + F IR+ + + YE Sbjct: 239 KSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYE 298 Query: 445 PXTAP 459 P P Sbjct: 299 PELFP 303 >X70838-1|CAA50186.1| 224|Drosophila melanogaster TBP-related factor protein. Length = 224 Score = 80.2 bits (189), Expect = 1e-15 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%) Frame = +1 Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEF--RRENGMVTMKLRRPYTTASIWSSGRVT 255 +I + N+V +FSV C L+L+ I N E+ +R G++ M++ P TA I+ +G+V Sbjct: 48 EIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI-MRMHSPRCTALIFRTGKVI 106 Query: 256 CTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE- 432 CTGA +E +A I +R++AR LQKLGF + T + F IR+ + + + + Sbjct: 107 CTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQF 166 Query: 433 ADYEPXTAP 459 + YEP P Sbjct: 167 SSYEPEMFP 175 >X70837-1|CAA50185.1| 224|Drosophila melanogaster TBP-related factor protein. Length = 224 Score = 80.2 bits (189), Expect = 1e-15 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%) Frame = +1 Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEF--RRENGMVTMKLRRPYTTASIWSSGRVT 255 +I + N+V +FSV C L+L+ I N E+ +R G++ M++ P TA I+ +G+V Sbjct: 48 EIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI-MRMHSPRCTALIFRTGKVI 106 Query: 256 CTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE- 432 CTGA +E +A I +R++AR LQKLGF + T + F IR+ + + + + Sbjct: 107 CTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQF 166 Query: 433 ADYEPXTAP 459 + YEP P Sbjct: 167 SSYEPEMFP 175 >AY128483-1|AAM75076.1| 224|Drosophila melanogaster RE61442p protein. Length = 224 Score = 80.2 bits (189), Expect = 1e-15 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%) Frame = +1 Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEF--RRENGMVTMKLRRPYTTASIWSSGRVT 255 +I + N+V +FSV C L+L+ I N E+ +R G++ M++ P TA I+ +G+V Sbjct: 48 EIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI-MRMHSPRCTALIFRTGKVI 106 Query: 256 CTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE- 432 CTGA +E +A I +R++AR LQKLGF + T + F IR+ + + + + Sbjct: 107 CTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQF 166 Query: 433 ADYEPXTAP 459 + YEP P Sbjct: 167 SSYEPEMFP 175 >AE014134-1392|AAF52600.1| 224|Drosophila melanogaster CG7562-PA protein. Length = 224 Score = 80.2 bits (189), Expect = 1e-15 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%) Frame = +1 Query: 82 DIMINNVVCSFSVKCHLNLRQIALNGVNVEF--RRENGMVTMKLRRPYTTASIWSSGRVT 255 +I + N+V +FSV C L+L+ I N E+ +R G++ M++ P TA I+ +G+V Sbjct: 48 EIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI-MRMHSPRCTALIFRTGKVI 106 Query: 256 CTGATSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE- 432 CTGA +E +A I +R++AR LQKLGF + T + F IR+ + + + + Sbjct: 107 CTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDLRFPIRLENLNHVHGQF 166 Query: 433 ADYEPXTAP 459 + YEP P Sbjct: 167 SSYEPEMFP 175 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,016,158 Number of Sequences: 53049 Number of extensions: 355511 Number of successful extensions: 1082 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1024 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1072 length of database: 24,988,368 effective HSP length: 80 effective length of database: 20,744,448 effective search space used: 1784022528 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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