Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0699
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding pr... 87 5e-18
L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box bindin... 87 5e-18
AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription... 87 5e-18
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 87 9e-18
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 87 9e-18
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 87 9e-18
>U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding
protein protein 1 protein.
Length = 340
Score = 87.4 bits (207), Expect = 5e-18
Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 168 LQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 227
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE +++AAR+YAR +QKLGF+ +G+C + F I++ + + + YE
Sbjct: 228 KSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYE 287
Query: 445 PXTAP 459
P P
Sbjct: 288 PELFP 292
>L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box binding
protein protein.
Length = 340
Score = 87.4 bits (207), Expect = 5e-18
Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 168 LQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 227
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE +++AAR+YAR +QKLGF+ +G+C + F I++ + + + YE
Sbjct: 228 KSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYE 287
Query: 445 PXTAP 459
P P
Sbjct: 288 PELFP 292
>AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription
factor TFIID protein.
Length = 340
Score = 87.4 bits (207), Expect = 5e-18
Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 168 LQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 227
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE +++AAR+YAR +QKLGF+ +G+C + F I++ + + + YE
Sbjct: 228 KSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFSTYE 287
Query: 445 PXTAP 459
P P
Sbjct: 288 PELFP 292
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 86.6 bits (205), Expect = 9e-18
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
IDI I NVVC++++ H++LR++A+N NV + RE G++ + R P ++SSG+V
Sbjct: 263 IDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYI 322
Query: 259 TGATSEXQAKIAARRYARALQ----KLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY 426
G SE K AAR AR +Q K L TCR+PF I+I + KY
Sbjct: 323 VGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIKIEEVAAKY 382
Query: 427 -READYEP 447
E+ YEP
Sbjct: 383 PSESTYEP 390
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 86.6 bits (205), Expect = 9e-18
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
IDI I NVVC++++ H++LR++A+N NV + RE G++ + R P ++SSG+V
Sbjct: 263 IDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYI 322
Query: 259 TGATSEXQAKIAARRYARALQ----KLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY 426
G SE K AAR AR +Q K L TCR+PF I+I + KY
Sbjct: 323 VGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIKIEEVAAKY 382
Query: 427 -READYEP 447
E+ YEP
Sbjct: 383 PSESTYEP 390
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 86.6 bits (205), Expect = 9e-18
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Frame = +1
Query: 79 IDIMINNVVCSFSVKCHLNLRQIALNGVNVEFRRENGMVTMKLRRPYTTASIWSSGRVTC 258
IDI I NVVC++++ H++LR++A+N NV + RE G++ + R P ++SSG+V
Sbjct: 263 IDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYI 322
Query: 259 TGATSEXQAKIAARRYARALQ----KLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKY 426
G SE K AAR AR +Q K L TCR+PF I+I + KY
Sbjct: 323 VGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIKIEEVAAKY 382
Query: 427 -READYEP 447
E+ YEP
Sbjct: 383 PSESTYEP 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,315
Number of Sequences: 27780
Number of extensions: 180032
Number of successful extensions: 431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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