Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0699
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.5  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   5.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 214 PYTTASIWSSGRVTC 258
           P TT  ++SSG V+C
Sbjct: 145 PPTTCLVFSSGSVSC 159


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 166 VEFRRENGMVTMKLRRPYTTASI 234
           VE    NG+ T+K   P+    I
Sbjct: 41  VELTENNGLYTLKTTSPFKNTEI 63


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 85  IMINNVVCSFSVKCHLNLRQIALN 156
           I +NN+  S+ +KC +  +   LN
Sbjct: 49  IKLNNIPKSYGIKCEIYAKCEFLN 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,651
Number of Sequences: 438
Number of extensions: 1830
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)