Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0699
(500 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55520.2 68414.m06352 transcription initiation factor IID-2 (... 91 3e-19
At1g55520.1 68414.m06351 transcription initiation factor IID-2 (... 91 3e-19
At3g13445.1 68416.m01691 transcription initiation factor IID-1 (... 91 5e-19
At1g43245.1 68414.m04985 expressed protein 29 2.3
At2g44680.2 68415.m05561 casein kinase II beta chain, putative s... 27 5.4
At2g44680.1 68415.m05560 casein kinase II beta chain, putative s... 27 5.4
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 27 7.1
>At1g55520.2 68414.m06352 transcription initiation factor IID-2
(TFIID-2) / TATA-box factor 2 / TATA sequence-binding
protein 2 (TBP2) identical to
Swiss-Prot:P28148|TF22_ARATH Transcription initiation
factor TFIID-2 (TATA-box factor 2) (TATA
sequence-binding protein 2) (TBP-2) [Arabidopsis
thaliana]
Length = 200
Score = 91.5 bits (217), Expect = 3e-19
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I++SG++ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE +K+AAR+YAR +QKLGF +G+C + F IR+ + + + YE
Sbjct: 85 KSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYE 144
Query: 445 PXTAP 459
P P
Sbjct: 145 PELFP 149
>At1g55520.1 68414.m06351 transcription initiation factor IID-2
(TFIID-2) / TATA-box factor 2 / TATA sequence-binding
protein 2 (TBP2) identical to
Swiss-Prot:P28148|TF22_ARATH Transcription initiation
factor TFIID-2 (TATA-box factor 2) (TATA
sequence-binding protein 2) (TBP-2) [Arabidopsis
thaliana]
Length = 200
Score = 91.5 bits (217), Expect = 3e-19
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I++SG++ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE +K+AAR+YAR +QKLGF +G+C + F IR+ + + + YE
Sbjct: 85 KSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHSAFSSYE 144
Query: 445 PXTAP 459
P P
Sbjct: 145 PELFP 149
>At3g13445.1 68416.m01691 transcription initiation factor IID-1
(TFIID-1) / TATA-box factor 1 / TATA sequence-binding
protein 1 (TBP1) identical to Swiss-Prot:P28147
transcription initiation factor TFIID-1 (TATA-box factor
1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
Length = 200
Score = 90.6 bits (215), Expect = 5e-19
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = +1
Query: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFRREN-GMVTMKLRRPYTTASIWSSGRVTCTGA 267
+ N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I++SG++ CTGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 268 TSEXQAKIAARRYARALQKLGFEXXXXXXXXXXXLGTCRMPFXIRIISFSKKYRE-ADYE 444
SE +K+AAR+YAR +QKLGF +G+C + F IR+ + + + YE
Sbjct: 85 KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 144
Query: 445 PXTAP 459
P P
Sbjct: 145 PELFP 149
>At1g43245.1 68414.m04985 expressed protein
Length = 558
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = -1
Query: 275 SLVAPVHVTRPDDQIEAVVYGRRNFIVTIPFSRRNSTLTPFNAICXXXXXXXXXXXXXXX 96
+L+ H+ D I ++ NFI T+ S R +T AIC
Sbjct: 103 NLLTNHHLLMADPSISVAIHHAANFIATVIRSNRKNTELEEAAICAVLTNAVEVHDSNGL 162
Query: 95 FIMISIYWSLLFFIN 51
+ I++Y S +IN
Sbjct: 163 ALGIALYNSSFSWIN 177
>At2g44680.2 68415.m05561 casein kinase II beta chain, putative
similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:O81275
Length = 282
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 346 GSALQSRVSVRRVHNVEQQSSLDXHWWR--PCTSRVLTTKSKPSCTAGATSSLPSHS 182
G + +S + + +LD H + P TSRV T+K K S + +T+ HS
Sbjct: 14 GGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKDSVPSTSTAKSQLHS 70
>At2g44680.1 68415.m05560 casein kinase II beta chain, putative
similar to casein kinase II beta-3 chain (CK II)
[Arabidopsis thaliana] SWISS-PROT:O81275
Length = 283
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 346 GSALQSRVSVRRVHNVEQQSSLDXHWWR--PCTSRVLTTKSKPSCTAGATSSLPSHS 182
G + +S + + +LD H + P TSRV T+K K S + +T+ HS
Sbjct: 14 GGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKDSVPSTSTAKSQLHS 70
>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
protein (ROS1) similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1393
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 313 RVHNVEQQSSLDXHWWRPCTSRVLTTKSKPSCTA 212
R+ ++Q++ + H+ +V TKSKP+C A
Sbjct: 1014 RLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNA 1047
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,527,219
Number of Sequences: 28952
Number of extensions: 163482
Number of successful extensions: 355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -