Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0698
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...   117   2e-27
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    30   0.33 
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    29   0.77 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.8  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   1.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.1  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    26   4.1  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   7.2  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   7.2  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   7.2  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   9.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.5  

>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score =  117 bits (281), Expect = 2e-27
 Identities = 56/109 (51%), Positives = 77/109 (70%), Gaps = 2/109 (1%)
 Frame = +2

Query: 296 TKKMSLKTEGDLRDGLSAEDTFANS--EGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKIL 469
           T+ + +  + + +DGLS +D   ++   GLT+NDFL+LPGYIDF    V L + +++ I+
Sbjct: 8   TEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVSLETRISRNIV 67

Query: 470 LKAPLVSTPMDTVTEADMAISMALCGGIGIIHHNCTXEYQANEVHKVEE 616
           LK P +S+PMDTVTE  MAI MAL GGIG+IHHNCT E QA  V KV++
Sbjct: 68  LKTPFMSSPMDTVTEDQMAIYMALLGGIGVIHHNCTPEEQAAMVRKVKK 116


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 492 VDTRGAFNRIFLVSGDVKSTSSAVKSIYP-GSSKKSLYVSPSLLAKVSSADNPSRRSPSV 316
           + T GA       +GD ++TSS   S+ P  SS  +  V+P   + V+++  P   S  V
Sbjct: 55  ISTNGAAKEAATAAGDAETTSSVAASVTPAASSSVAASVTPVASSSVAASVTPVSSSAVV 114


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 553 NSTAKRHGYGHVSFCHCVHWSR 488
           N+   +HG GHV F  C++ SR
Sbjct: 7   NNGRNKHGRGHVKFVRCINCSR 28


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = -3

Query: 552 IPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGD----VKSTSSAVKSIYPGSSKKSL 385
           +P  +++++++S+S   S    T   F+ +   +      V STSS+  S    +S  S 
Sbjct: 149 LPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208

Query: 384 YVSPSLLAKVSSADNPSRRSPS 319
           Y+S S  + VSS+ +PS  S S
Sbjct: 209 YLSSS--SVVSSSSSPSSSSSS 228


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 417 SIYPGSSKKSLYVSPSLLAKVSSADNPSRRSPSVFNDIFFVRDIFL 280
           SI+P S KK + VSP +L    S       S S      ++ ++FL
Sbjct: 537 SIFPTSDKKHIVVSPVMLTMAESLSQSPADSLSDVCKKLYIANLFL 582


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 374  GLTYNDFLLLPGY----IDFTAEEVDLTSPLTKKILLK 475
            G TYND    P +     D+T++E+DL +P T +   K
Sbjct: 1941 GRTYNDLTQYPVFPWVIADYTSKELDLNNPKTYRNFCK 1978



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
 Frame = -3

Query: 585 YSXVQLWCIMPIPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGDVKST--------S 430
           YS +      P+ P +   +++  ++   +  D   A   +FL+S  +KST        S
Sbjct: 374 YSSIDFTLSSPVMPINGYSVSLWLNIESLMNDDGNYAPTTLFLISDFLKSTLFRLLLDAS 433

Query: 429 SAVKSIYPGSSKKSLYVS-----PSLLAKVSSADNPSRRSPS 319
                ++ GSSK +  V+      +  +K+   DNPS   PS
Sbjct: 434 KKTVVVHIGSSKDTCVVNFSTPITNFFSKIYK-DNPSLNPPS 474


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = -3

Query: 459 LVSGDVKSTSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSPS 319
           LVS    S+SSA  S    SS  S   S S     SS+   S RS S
Sbjct: 128 LVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSS 174


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 553 NSTAKRHGYGHVSFCHCVHWSR 488
           N    +HG GH  F  C++ SR
Sbjct: 7   NCGRNKHGRGHTKFVRCINCSR 28


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 324 ATSEMGYLLRIPSLTVKDLHITISYC 401
           A +E G L  IPSL +  L+IT+ YC
Sbjct: 142 AMAERGRL--IPSLVISFLYITLVYC 165


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 247 VLVNQIKSDLEKKYITYEKNVIKDGRRPPRWVI 345
           V VNQ+  D+  +   Y KNVI++      W +
Sbjct: 430 VQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAV 462


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 363 AKVSSADNPSRRSPSVFNDIFFVRDIFLL*IRFYLIYQYW 244
           A  +S+D P+  S     ++FF+++I +L    YL+Y+ W
Sbjct: 13  AVFASSDKPNNCSRK---NMFFLKNIIVLSNYLYLLYKAW 49


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/72 (22%), Positives = 28/72 (38%)
 Frame = -3

Query: 555 PIPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGDVKSTSSAVKSIYPGSSKKSLYVS 376
           P+ P      A++ + T +  V +    N  F V    ++ S    + YP S+    Y +
Sbjct: 340 PLQPARTGPAAINYNYTTNYSVSSPSVTNPFFDVGSSTQNASLMGSTGYPSSANNVYYEN 399

Query: 375 PSLLAKVSSADN 340
                  S +DN
Sbjct: 400 SYQGVGTSMSDN 411


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 280 KKYITYEKNVIKDGRRPPRW 339
           K Y  Y++ V +DGR P  W
Sbjct: 602 KAYEAYQQAVYRDGRNPTFW 621


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 610 HFVNFISLVFXSTVV-VYNANSTAK-RHGYGHVSFCHCVHWSRH 485
           H  +F+S+   + +V +Y+  S  K R   GH +   C+ W+RH
Sbjct: 231 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,691
Number of Sequences: 5004
Number of extensions: 48380
Number of successful extensions: 168
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)