Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0698
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551...    81   1e-15
03_05_0207 - 21985340-21985570,21986430-21986636,21999578-219996...    31   1.1  
04_03_0008 + 9296711-9298096                                           28   7.4  
07_03_0105 + 13455906-13457198                                         27   9.8  
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    27   9.8  

>03_06_0175 +
           32152428-32153423,32153692-32153889,32154942-32155121,
           32156224-32156481,32157310-32157381
          Length = 567

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 39/89 (43%), Positives = 55/89 (61%)
 Frame = +2

Query: 335 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTE 514
           DG  A   F+     TY+D + LPGYI F A+ VDL++ L+++I L  P V++PMDTV+E
Sbjct: 11  DGFPAPRLFSQGVSYTYDDVIFLPGYIGFPADAVDLSTRLSRRIPLSIPCVASPMDTVSE 70

Query: 515 ADMAISMALCGGIGIIHHNCTXEYQANEV 601
           A MA +MA  G   ++H N     QA+ V
Sbjct: 71  AAMAAAMASLGAAAVVHCNTEPHLQASIV 99


>03_05_0207 -
           21985340-21985570,21986430-21986636,21999578-21999667,
           21999764-21999945,22000130-22001042,22003184-22003266,
           22004622-22004939,22005044-22005107
          Length = 695

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = -3

Query: 561 IMPIPPQSAMDMAMSASVTVSIGVDTRGAFNRIFLVSGDVKSTSSAVKSIYPGSSKKSLY 382
           I+P+PP        S      IGV     +N++      VK  ++  +  +    KK  Y
Sbjct: 157 ILPLPPMDHSSSEESDVSDSDIGVHEEKTYNQLRAEKVKVKHGNNTFRCPFCPGKKKQDY 216

Query: 381 VSPSLLAKVSSADNPSRRSPSV 316
            S  LL   S     S+R   V
Sbjct: 217 SSKDLLQHASGVGAASKRKAKV 238


>04_03_0008 + 9296711-9298096
          Length = 461

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 494 PMDTVTEADMAISMALCGGIGIIHHNCTXEYQ 589
           P DTV   D+ ++  +CGG G   ++C   ++
Sbjct: 131 PQDTVKALDLHVTCEVCGGTGHSGNDCPETHE 162


>07_03_0105 + 13455906-13457198
          Length = 430

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 476 APLVSTPMDTVTEADMAISMALCGGI 553
           A   STP DT+     A S+ LCGG+
Sbjct: 251 AAAFSTPYDTIARHTDAKSVVLCGGV 276


>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
            48730-48840,48935-49195,49415-49638,49735-49855,
            50673-51214,51302-51488,51569-51895,52047-52197,
            52287-52424,52918-53013,53276-53357,54411-54679,
            54769-54882,55050-55288,55488-55715,55799-55951,
            56479-56616,57061-57188,57598-57718,58142-58306,
            59486-59633,59772-59898,60025-60118,60119-60268,
            60577-60624,60712-60819,61040-61114,61225-61275,
            61341-61487,61584-61714,61944-62031,62204-62266,
            62336-62582,62830-62981,63056-63126,63214-63370,
            63520-63687
          Length = 2323

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/72 (19%), Positives = 31/72 (43%)
 Frame = +2

Query: 392  FLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTEADMAISMALCGGIGIIHHN 571
            +L++  ++D T E   +   +  +  +  PL+    D V   D    + +     ++H N
Sbjct: 1028 YLVMHSFLDITWEHYLVCPQIVPRGFVLGPLLRGLNDVVHHKDFEFEVEILKNTALLHQN 1087

Query: 572  CTXEYQANEVHK 607
                ++A+ V K
Sbjct: 1088 YLAIFRADSVPK 1099


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,677
Number of Sequences: 37544
Number of extensions: 272400
Number of successful extensions: 787
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)