Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0698
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                      132   3e-31
SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)                47   8e-13
SB_909| Best HMM Match : Transgly_assoc (HMM E-Value=2.2)              31   0.81 
SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)           30   1.9  
SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056)             29   4.3  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      28   7.6  
SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)                        28   7.6  

>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score =  132 bits (318), Expect = 3e-31
 Identities = 59/94 (62%), Positives = 78/94 (82%)
 Frame = +2

Query: 335 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTE 514
           DGL+A   F   +GLTY+DFL+LPG+IDF+A+ V+L S LT++I LK P VS+PMDTVTE
Sbjct: 209 DGLTANALFGGGQGLTYDDFLILPGFIDFSADVVELNSALTREITLKTPFVSSPMDTVTE 268

Query: 515 ADMAISMALCGGIGIIHHNCTXEYQANEVHKVEE 616
           + MA++MAL GGIGIIHHNC+ E+QA+EV KV++
Sbjct: 269 SAMAVAMALHGGIGIIHHNCSIEFQADEVKKVKK 302


>SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 46.8 bits (106), Expect(2) = 8e-13
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +2

Query: 518 DMAISMALCGGIGIIHHNCTXEYQANEVHKVEE 616
           D   +  L GGIGIIHHNC+ E+QANE+ KV++
Sbjct: 42  DFPATDVLNGGIGIIHHNCSIEFQANEIRKVKK 74



 Score = 44.4 bits (100), Expect(2) = 8e-13
 Identities = 19/34 (55%), Positives = 27/34 (79%)
 Frame = +2

Query: 335 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEV 436
           DG++A   F  S+GLTY+DF++LPG+IDF A +V
Sbjct: 16  DGMTAGQLF-QSDGLTYSDFIILPGFIDFPATDV 48


>SB_909| Best HMM Match : Transgly_assoc (HMM E-Value=2.2)
          Length = 243

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +2

Query: 305 MSLKTEGDLRDGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPL 484
           +S    G L  G+S E  F + + L     ++L G        +      T K L   PL
Sbjct: 127 LSFILSGSLIIGISCESLFKSKQELQPRSLIILSGTAAIVNGILSYIIFNTSKRLRSVPL 186

Query: 485 VSTPMDTVTEADMAISM 535
           ++  +DTV EA M++ +
Sbjct: 187 LTLSIDTVFEALMSLGV 203


>SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)
          Length = 646

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 511 CHCVHWSRH*RCF*QNFLSEWRCQIDFFCC 422
           CHC   S++  CF + FL   R  ++ FCC
Sbjct: 493 CHCTRHSKNCGCFSEQFLKNAR--VNHFCC 520


>SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 278 RRNISRTKKMSLKTEGDLRDGLSAEDTFANSEGLTYNDFL 397
           RR I +T    LKT  DLRD +       +   LTYN FL
Sbjct: 112 RRKIKKTPSAKLKTLTDLRDFILNYKRNGDPALLTYNPFL 151


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 511 CHCVHWSRH*RCF*QNFLSEWRCQIDFFCC 422
           CHC   S++  CF + FL   R  ++ FCC
Sbjct: 512 CHCTRHSKNCGCFSKQFLKNAR--VNHFCC 539


>SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056)
          Length = 416

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/95 (24%), Positives = 40/95 (42%)
 Frame = +2

Query: 281 RNISRTKKMSLKTEGDLRDGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTK 460
           R+I ++++   +  G L   +S +  F   + L     L+L G        +      T 
Sbjct: 122 RDIDQSREEQRRPSGVLSIAISCDSLFKTKQELPPKSTLILSGISAAVNGILSYILFKTA 181

Query: 461 KILLKAPLVSTPMDTVTEADMAISMALCGGIGIIH 565
           K L   PL+   +DTV EA   +S+ L   + + H
Sbjct: 182 KRLRNVPLLVLSIDTVLEA--LLSLGLGASVVLTH 214


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 441 KSTSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSP 322
           +S SSA K+   GSS K++  S S   K S + +P++ +P
Sbjct: 334 RSASSASKTPRSGSSAKTIQKSGSPAPKTSRSGSPAQGTP 373


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 199 IFSRETTLPAFLITLPVLVNQIKSDLEK 282
           I+SR+  L  FL T+PVL++  + + EK
Sbjct: 235 IYSRQIFLTPFLSTIPVLIDDNRPNYEK 262


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 438 STSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSP 322
           STSS  ++    SS+     S S L+ VSS+   SRRSP
Sbjct: 268 STSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSP 306


>SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 438 STSSAVKSIYPGSSKKSLYVSPSLLAKVSSADNPSRRSP 322
           STSS  ++    SS+     S S L+ VSS+   SRRSP
Sbjct: 268 STSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSP 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,676,565
Number of Sequences: 59808
Number of extensions: 328950
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)