Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0698
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16350.1 68414.m01956 inosine-5'-monophosphate dehydrogenase,...    95   5e-20
At1g79470.1 68414.m09262 inosine-5'-monophosphate dehydrogenase ...    93   2e-19
At3g58360.1 68416.m06505 meprin and TRAF homology domain-contain...    29   3.5  
At3g30390.1 68416.m03836 amino acid transporter family protein l...    28   4.7  
At2g22850.1 68415.m02713 bZIP transcription factor family protei...    28   4.7  
At1g49190.1 68414.m05515 two-component responsive regulator fami...    28   6.2  
At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransfer...    27   8.2  

>At1g16350.1 68414.m01956 inosine-5'-monophosphate dehydrogenase,
           putative strong similarity to SP|P47996 gb|L34684
           inosine monophosphate dehydrogenase (IMPDH) from
           Arabidopsis thaliana; member of the PF|00478 IMP
           dehydrogenase family
          Length = 502

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 41/95 (43%), Positives = 64/95 (67%)
 Frame = +2

Query: 335 DGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTVTE 514
           DG SAE  F+     TY+D + LP +IDF+ + V L++ L+K++ L  P V++PMDTV+E
Sbjct: 6   DGFSAEKLFSQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSKRVPLSIPCVASPMDTVSE 65

Query: 515 ADMAISMALCGGIGIIHHNCTXEYQANEVHKVEEV 619
           + MA +MA  GGIGI+H+NC  + QA+ +   + +
Sbjct: 66  SHMAAAMAALGGIGIVHYNCDIDTQASVIRHAKSL 100


>At1g79470.1 68414.m09262 inosine-5'-monophosphate dehydrogenase
           identical to inosine-5'-monophosphate dehydrogenase
           SP|P47996 {Arabidopsis thaliana}
          Length = 503

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 41/97 (42%), Positives = 64/97 (65%)
 Frame = +2

Query: 329 LRDGLSAEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAPLVSTPMDTV 508
           L DG  A+  FA     TY+D + LP +IDF+ + V L++ L++++ L  P VS+PMDTV
Sbjct: 4   LEDGFPADKLFAQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSRRVPLSIPCVSSPMDTV 63

Query: 509 TEADMAISMALCGGIGIIHHNCTXEYQANEVHKVEEV 619
           +E+ MA +MA  GGIGI+H+NC    QA+ + + + +
Sbjct: 64  SESHMAAAMASLGGIGIVHYNCGIAAQASIIRQAKSL 100


>At3g58360.1 68416.m06505 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 298

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 347 AEDTFANSEGLTYNDFLLLPGYIDFTAEEVDLTSPLTKKILLKAP 481
           +E+T    E + +N F LLP  +DF     +    +  +  LK P
Sbjct: 143 SEETSTIMESMDFNGFQLLPSQVDFVRHMFEKHPEIASEFRLKNP 187


>At3g30390.1 68416.m03836 amino acid transporter family protein low
           similarity to neuronal glutamine transporter [Rattus
           norvegicus] GI:6978016; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 460

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 172 LLKDNYHVWIFSRETTLPAFLITLPVLVNQIKSDLEKKYITYEKNVIKD 318
           +LKD  H    +R+TTL  F+I L VL N I +     Y  ++KN  ++
Sbjct: 414 ILKDR-HDKATNRDTTLAIFMIVLAVLSNAI-AIYSDAYALFKKNAPRE 460


>At2g22850.1 68415.m02713 bZIP transcription factor family protein
           contains a bZIP transcription factor basic domain
           signature (PDOC00036)
          Length = 227

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 214 TTLPAFLITLPVLVNQIKSDLEKKYITYEKN 306
           +T+PAF  T P LVNQ+ SD +  +  +E N
Sbjct: 3   STVPAFTFTEPGLVNQL-SDFQTGFTPWELN 32


>At1g49190.1 68414.m05515 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
           ;contains similarity to two-component response regulator
           protein (ARR2) GI:4210451 from [Arabidopsis thaliana]
          Length = 608

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 214 TTLPAFLITLPVLVNQI-KSDLEKKYITYEKNVIKDGRRPP 333
           TT+P++L+  P  +NQI ++  +  ++T   N I     PP
Sbjct: 508 TTIPSYLMNGPATLNQIQQNQYQNGFLTMNNNQIITNPPPP 548


>At4g01970.1 68417.m00262 galactinol-raffinose
           galactosyltransferase, putative similar to
           galactinol-raffinose galactosyltransferase GI:6634701
           from [Vigna angularis]
          Length = 807

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 476 APLVSTPMDTVTEADMAISMALCGGIGIIHHNCTXEY 586
           AP   +P    T AD+A+   +  GIG++H +   E+
Sbjct: 373 APFELSPSLGATMADLAVDKVVEAGIGLVHPSKAHEF 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,495,398
Number of Sequences: 28952
Number of extensions: 236598
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)