Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0697
(500 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 129 2e-31
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 126 1e-30
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.30
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 3.7
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 4.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.4
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.4
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 8.4
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 129 bits (312), Expect = 2e-31
Identities = 59/118 (50%), Positives = 85/118 (72%)
Frame = +3
Query: 21 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 200
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 201 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 374
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGER 119
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 126 bits (305), Expect = 1e-30
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Frame = +3
Query: 21 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 200
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 201 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY- 377
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 378 -IXKGKDGXLV*LSLTLPNXTMNXSLEXNSL 467
+ K G V +S + + + LE NSL
Sbjct: 122 RVIKCLPGVTVSISSAVKDEII---LEGNSL 149
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.5 bits (63), Expect = 0.30
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +3
Query: 48 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 215
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 216 AVRTVCSHVENMIKGVT 266
+ T+CS + N++ VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +3
Query: 81 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 260
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 261 VTK 269
++K
Sbjct: 1170 LSK 1172
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 214 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 104
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 6.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 224 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENXAGP 102
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 74 MDRKPVWDFDFLICYNLLHVWALF 3
M+R P+ FDF+ N +H LF
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF 317
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -1
Query: 230 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENXAGPFNCHQT 84
D P+G GS F+ V+H+N N+ + +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,671
Number of Sequences: 5004
Number of extensions: 37178
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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