Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0697
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        161   4e-40
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     28   3.8  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                28   5.0  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   5.0  
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)                27   6.6  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  161 bits (390), Expect = 4e-40
 Identities = 70/123 (56%), Positives = 95/123 (77%)
 Frame = +3

Query: 18  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 197
           MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V    ++V+ WF 
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616

Query: 198 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 377
           S+KELA V+T+ +H+ENMIKGV  G++YKMRAVYAHFPIN    E  +++E+RNFLGEKY
Sbjct: 617 SRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKY 676

Query: 378 IXK 386
           + +
Sbjct: 677 VRR 679


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 232 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 89
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +3

Query: 48  KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 182
           K+ DGL VH+ ++ V  K P+    + KR  + L A+ I + +P + KV
Sbjct: 4   KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 3   KQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 113
           + +  +K++  + K K  DG+ VH K+   TV+ PRG
Sbjct: 99  QNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 75   VKSRLVTVKGPRGVLKRNFKHL 140
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
          Length = 739

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = -1

Query: 128 VPFENX-AGPFNCHQTRFHMD--RKPVW---DFDFLICYNLLH 18
           +PF     GP +C +TRF +D  R P W   D+  L+C  +++
Sbjct: 6   IPFNALIVGPTSCGKTRFVVDRLRGPFWVKFDYILLVCPTIVY 48


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 128 VPFENX-AGPFNCHQTRFHMD--RKPVWDFDFLIC 33
           +PF     GP +C +TRF +D  R P  D+  L+C
Sbjct: 712 IPFNALIVGPTSCGKTRFIVDRLRGPFLDYIVLVC 746


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 201  KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE 350
            K+ LAA + V +   N+ KGVT+G    K R V    PI    V T+G  + +
Sbjct: 948  KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQ 1000


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,706
Number of Sequences: 59808
Number of extensions: 301849
Number of successful extensions: 716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)