Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0697
         (500 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022718-1|AAY55134.1|  190|Drosophila melanogaster RE74350p pro...   193   1e-49
AE014134-2010|AAF53049.1|  190|Drosophila melanogaster CG6141-PB...   193   1e-49
AE014134-2009|AAF53048.2|  190|Drosophila melanogaster CG6141-PA...   193   1e-49
X94613-1|CAA64319.1|  190|Drosophila melanogaster ribosomal prot...   192   2e-49
AY060683-1|AAL28231.1|  284|Drosophila melanogaster GH12395p pro...    29   2.7  
AE014297-2850|AAN14364.1|  284|Drosophila melanogaster CG31200-P...    29   2.7  
BT023113-1|AAY55529.1|  423|Drosophila melanogaster IP03677p pro...    28   6.2  
AY069587-1|AAL39732.2|  639|Drosophila melanogaster LD33388p pro...    28   6.2  
AY058785-1|AAL14014.1| 1068|Drosophila melanogaster SD08329p pro...    28   6.2  
AE014296-109|AAN11444.1| 1340|Drosophila melanogaster CG17090-PB...    28   6.2  
AE014296-108|AAF47392.2| 1340|Drosophila melanogaster CG17090-PA...    28   6.2  
BT004835-1|AAO45191.1|  241|Drosophila melanogaster RH48327p pro...    28   8.2  
AY060620-1|AAL28168.1|  210|Drosophila melanogaster GH04443p pro...    28   8.2  
AE013599-580|AAF59143.1|  210|Drosophila melanogaster CG12770-PA...    28   8.2  

>BT022718-1|AAY55134.1|  190|Drosophila melanogaster RE74350p
           protein.
          Length = 190

 Score =  193 bits (470), Expect = 1e-49
 Identities = 89/123 (72%), Positives = 105/123 (85%)
 Frame = +3

Query: 18  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 197
           M+ I +NQ VKIP  +   VK+R+VT+ G RG LKR+FKHLA+D+ M + R LKVEKWFG
Sbjct: 1   MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60

Query: 198 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 377
           +KKELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKY
Sbjct: 61  TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120

Query: 378 IXK 386
           I +
Sbjct: 121 IRR 123


>AE014134-2010|AAF53049.1|  190|Drosophila melanogaster CG6141-PB,
           isoform B protein.
          Length = 190

 Score =  193 bits (470), Expect = 1e-49
 Identities = 89/123 (72%), Positives = 105/123 (85%)
 Frame = +3

Query: 18  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 197
           M+ I +NQ VKIP  +   VK+R+VT+ G RG LKR+FKHLA+D+ M + R LKVEKWFG
Sbjct: 1   MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60

Query: 198 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 377
           +KKELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKY
Sbjct: 61  TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120

Query: 378 IXK 386
           I +
Sbjct: 121 IRR 123


>AE014134-2009|AAF53048.2|  190|Drosophila melanogaster CG6141-PA,
           isoform A protein.
          Length = 190

 Score =  193 bits (470), Expect = 1e-49
 Identities = 89/123 (72%), Positives = 105/123 (85%)
 Frame = +3

Query: 18  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 197
           M+ I +NQ VKIP  +   VK+R+VT+ G RG LKR+FKHLA+D+ M + R LKVEKWFG
Sbjct: 1   MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60

Query: 198 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 377
           +KKELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKY
Sbjct: 61  TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120

Query: 378 IXK 386
           I +
Sbjct: 121 IRR 123


>X94613-1|CAA64319.1|  190|Drosophila melanogaster ribosomal protein
           L9 protein.
          Length = 190

 Score =  192 bits (469), Expect = 2e-49
 Identities = 89/123 (72%), Positives = 104/123 (84%)
 Frame = +3

Query: 18  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 197
           M+ I +NQ VKIP  +   VK+R+VT+ G RG LKR FKHLA+D+ M + R LKVEKWFG
Sbjct: 1   MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRTFKHLALDMYMPDKRTLKVEKWFG 60

Query: 198 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 377
           +KKELAAVRTVCSH+ENMIKGVT GFQYKMRAVYAHFPINCVT+E N++IEIRNFLGEKY
Sbjct: 61  TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120

Query: 378 IXK 386
           I +
Sbjct: 121 IRR 123


>AY060683-1|AAL28231.1|  284|Drosophila melanogaster GH12395p
           protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 277 WKPLVTPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKC 134
           W   V P+ +  T E   LT  +  +   NH ++ + +G  M +ST KC
Sbjct: 157 WTNWVQPICLEGTSEPETLTNRNLHYTGFNHMASEKGKGLAMTVSTQKC 205


>AE014297-2850|AAN14364.1|  284|Drosophila melanogaster CG31200-PA
           protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 277 WKPLVTPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKC 134
           W   V P+ +  T E   LT  +  +   NH ++ + +G  M +ST KC
Sbjct: 157 WTNWVQPICLEGTSEPETLTNRNLHYTGFNHMASEKGKGLAMTVSTQKC 205


>BT023113-1|AAY55529.1|  423|Drosophila melanogaster IP03677p
           protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 234 NRLSSRRQAPFWIRTISQPSGDE-GLPCECQ 145
           +R   RR+   W RT+ QP G   G  CECQ
Sbjct: 390 SRCQRRRRWCCWWRTLRQPGGRRPGRLCECQ 420


>AY069587-1|AAL39732.2|  639|Drosophila melanogaster LD33388p
           protein.
          Length = 639

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 11  PKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRXSQKEL*TLGC*HSHGKPSSP 175
           PKH  N  +++ +    A+    IA G+S R PR  +KE   L       K SSP
Sbjct: 27  PKHHLNLPRNDLKKESPAH---HIAKGNSYRVPRHEKKEHQQLSPVKKRVKESSP 78


>AY058785-1|AAL14014.1| 1068|Drosophila melanogaster SD08329p
           protein.
          Length = 1068

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 11  PKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRXSQKEL*TLGC*HSHGKPSSP 175
           PKH  N  +++ +    A+    IA G+S R PR  +KE   L       K SSP
Sbjct: 457 PKHHLNLPRNDLKKESPAH---HIAKGNSYRVPRHEKKEHQQLSPVKKRVKESSP 508


>AE014296-109|AAN11444.1| 1340|Drosophila melanogaster CG17090-PB,
           isoform B protein.
          Length = 1340

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 11  PKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRXSQKEL*TLGC*HSHGKPSSP 175
           PKH  N  +++ +    A+    IA G+S R PR  +KE   L       K SSP
Sbjct: 728 PKHHLNLPRNDLKKESPAH---HIAKGNSYRVPRHEKKEHQQLSPVKKRVKESSP 779


>AE014296-108|AAF47392.2| 1340|Drosophila melanogaster CG17090-PA,
           isoform A protein.
          Length = 1340

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +2

Query: 11  PKHEANCSKSESQNPRRAYGPCEIASGDS*RAPRXSQKEL*TLGC*HSHGKPSSP 175
           PKH  N  +++ +    A+    IA G+S R PR  +KE   L       K SSP
Sbjct: 728 PKHHLNLPRNDLKKESPAH---HIAKGNSYRVPRHEKKEHQQLSPVKKRVKESSP 779


>BT004835-1|AAO45191.1|  241|Drosophila melanogaster RH48327p
           protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 66  TVHVKSRLVTVKGPRGVLKRNFKHLAVDI 152
           TVH+K R +T K  R   K NFK L + I
Sbjct: 4   TVHLKDRTITEKLVRRAEKANFKALVLTI 32


>AY060620-1|AAL28168.1|  210|Drosophila melanogaster GH04443p
           protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 174 LKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHF 308
           LKVEKW GS  E+ A        + + +G  + F + + + YA F
Sbjct: 166 LKVEKWLGSLNEMQA-------SDELSEGQVRQFLFDLESAYADF 203


>AE013599-580|AAF59143.1|  210|Drosophila melanogaster CG12770-PA
           protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 174 LKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHF 308
           LKVEKW GS  E+ A        + + +G  + F + + + YA F
Sbjct: 166 LKVEKWLGSLNEMQA-------SDELSEGQVRQFLFDLESAYADF 203


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,729,175
Number of Sequences: 53049
Number of extensions: 436417
Number of successful extensions: 817
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)