Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0696
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...   121   1e-28
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    56   6e-09
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    33   0.052
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    33   0.052
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    27   2.6  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.0  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   7.9  

>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score =  121 bits (291), Expect = 1e-28
 Identities = 58/104 (55%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
 Frame = +3

Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVK--MISAEAPVLFAKAAEIF 482
           L ++W K ++ ++  + +  KT  LPLARIKK+MK D++VK  MISAEAP LFAK +EIF
Sbjct: 86  LAEYWQKTIDTLEH-DDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIF 144

Query: 483 IHELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIVPR 614
           I ELT+RAW H ++N+RRTLQR+DIA A+ KS+ +D LIDI+ +
Sbjct: 145 IAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDIISK 188


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 28/94 (29%), Positives = 50/94 (53%)
 Frame = +3

Query: 348 KVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEEN 527
           K N   +     P+ARIKKIM+ D++V  ++   PV+ +KA E+F+  +   +   T  +
Sbjct: 13  KPNPATYWKSRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLH 72

Query: 528 KRRTLQRNDIATAILKSDQFDXLIDIVPRXEVKP 629
           + + +  + +  A+   +QFD L DIV +    P
Sbjct: 73  QAKRVTVSHLKHAVQSVEQFDFLQDIVEKVPDAP 106


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 378 ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDI 557
           A P+ R+ ++++     + + A APV  A   E    E+   A +   +NK+  +    +
Sbjct: 26  AFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85

Query: 558 ATAILKSDQFDXLI 599
             AI   ++ + L+
Sbjct: 86  QLAIRNDEELNKLL 99


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 378 ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDI 557
           A P+ R+ ++++     + + A APV  A   E    E+   A +   +NK+  +    +
Sbjct: 26  AFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHL 85

Query: 558 ATAILKSDQFDXLI 599
             AI   ++ + L+
Sbjct: 86  QLAIRNDEELNKLL 99


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 201  WTFCSFFNQLHETNAPMFLFNYHSKLILKLCFGKL 97
            WTF  F+ Q++      +LF+Y   ++  L F  L
Sbjct: 1080 WTFTLFWYQIYNNFDANYLFDYTYVMLFNLIFSSL 1114


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 659 FPXGVVTRFRRLDFXPRHYVDQXIELIRFQYSCRYVVALQ 540
           F  G + +FRR  +  +  V+Q +E I+F+    Y V +Q
Sbjct: 126 FSNGWLDKFRRRHYIQQSAVNQALESIKFEVFREYPVHIQ 165


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 354 NSEDFKTQALPLARIKKIMKL 416
           N ++ K Q LPL  IKKI K+
Sbjct: 16  NLQEVKPQVLPLEEIKKIYKI 36


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 608 HYVDQXIELIRFQYSCRYV 552
           HY D+  EL++    CRYV
Sbjct: 100 HYGDEAFELLKANEECRYV 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,525
Number of Sequences: 5004
Number of extensions: 40918
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)