Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0696
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1057 + 27248249-27249001 152 2e-37
03_02_0380 - 7945959-7946699 149 2e-36
02_01_0529 - 3846489-3847268 149 2e-36
09_04_0535 + 18397051-18397644 134 8e-32
08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150 124 7e-29
08_02_1128 + 24510735-24511055 105 3e-23
04_04_1632 - 34926955-34927332 85 7e-17
01_05_0464 - 22470963-22472291 75 4e-14
01_01_0018 + 139150-140415 73 2e-13
01_03_0204 + 13771346-13772680 70 2e-12
10_02_0162 + 6054823-6055830 62 3e-10
05_03_0410 + 13616708-13617691 59 4e-09
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 55 5e-08
05_05_0328 + 24130887-24130919,24132207-24132279,24133542-241336... 54 8e-08
01_01_0592 + 4414416-4415132 50 2e-06
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 34 0.094
07_03_0791 + 21539069-21539257,21539493-21539711 33 0.16
12_02_0605 - 20924385-20924606,20924705-20924899 32 0.38
12_02_0151 - 14468480-14468698,14468902-14469090 32 0.38
07_03_0790 + 21536389-21536577,21536854-21537072 32 0.38
03_05_0949 + 29089293-29089487,29089592-29089810 32 0.38
03_02_0562 - 9469263-9469517,9469619-9469843 29 2.7
05_05_0119 - 22512228-22512500,22512577-22512795 29 4.7
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 8.2
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425... 28 8.2
>06_03_1057 + 27248249-27249001
Length = 250
Score = 152 bits (369), Expect = 2e-37
Identities = 73/106 (68%), Positives = 88/106 (83%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
LQQFW + L DI++ DFK +LPLARIKKIMK DE+V+MISAEAPV+FAKA EIFI
Sbjct: 80 LQQFWAERLVDIEQTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFIL 137
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIVPRXEVK 626
ELTLR+W HTEENKRRTLQ+NDIA AI ++D +D L+DIVPR ++K
Sbjct: 138 ELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDLK 183
>03_02_0380 - 7945959-7946699
Length = 246
Score = 149 bits (361), Expect = 2e-36
Identities = 69/106 (65%), Positives = 84/106 (79%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
LQ FW ++ ++ ++ DFK LPLARIKKIMK DE+V+MISAEAPVLFAKA E+FI
Sbjct: 46 LQAFWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFIL 105
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIVPRXEVK 626
ELT+R+W H EENKRRTLQRND+A AI ++D FD L+DIVPR E K
Sbjct: 106 ELTIRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIVPREEAK 151
>02_01_0529 - 3846489-3847268
Length = 259
Score = 149 bits (361), Expect = 2e-36
Identities = 70/106 (66%), Positives = 88/106 (83%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
L++FW +E+I++ DFK +LPLARIKKIMK DE+V+MISAEAPV+FAKA E+FI
Sbjct: 84 LREFWANQMEEIEQTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFIL 141
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIVPRXEVK 626
ELTLR+W HTEENKRRTLQ+NDIA AI ++D +D L+DIVPR E+K
Sbjct: 142 ELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMK 187
>09_04_0535 + 18397051-18397644
Length = 197
Score = 134 bits (323), Expect = 8e-32
Identities = 64/106 (60%), Positives = 81/106 (76%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
LQ FW + +I+ DFK LPLARIKKIMK DE+V+MI+AEAPV+FA+A E+FI
Sbjct: 60 LQMFWAEQYREIEATT--DFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFIL 117
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIVPRXEVK 626
ELT R W+H EENKRRTLQ++DIA AI +++ FD L+DIVPR + K
Sbjct: 118 ELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDDAK 163
>08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150
Length = 276
Score = 124 bits (299), Expect = 7e-29
Identities = 58/106 (54%), Positives = 79/106 (74%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
LQ FW + +++++ +FK LPLARIKKIMK DE+VKMI+ EAP LFAKA E+FI
Sbjct: 106 LQAFWADQMAEVEQMT--EFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFIL 163
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIVPRXEVK 626
++TLR+W HTEE +RRTLQR+D+ I K+D FD L+DI+ ++K
Sbjct: 164 DMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFDFLVDIITDDKMK 209
>08_02_1128 + 24510735-24511055
Length = 106
Score = 105 bits (253), Expect = 3e-23
Identities = 48/73 (65%), Positives = 61/73 (83%)
Frame = +3
Query: 408 MKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIATAILKSDQF 587
MK DE+V+MI+AEAPV+FA+A E+FI ELT R W+H EENKRRTLQ++DIA AI +++ F
Sbjct: 1 MKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVF 60
Query: 588 DXLIDIVPRXEVK 626
D L+DIVPR E K
Sbjct: 61 DFLVDIVPRDEAK 73
>04_04_1632 - 34926955-34927332
Length = 125
Score = 84.6 bits (200), Expect = 7e-17
Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 14/91 (15%)
Frame = +3
Query: 378 ALPLARIKKIMKL---DEEV-----------KMISAEAPVLFAKAAEIFIHELTLRAWSH 515
ALPLARIKKIMK D V +MIS EAPV+F+KA E+FI ELT RAW+
Sbjct: 23 ALPLARIKKIMKRSAGDSSVVDGGGGGGGGARMISGEAPVVFSKACELFIAELTRRAWAA 82
Query: 516 TEENKRRTLQRNDIATAILKSDQFDXLIDIV 608
T E KRRT+ + D+A A+ +D FD L+D+V
Sbjct: 83 TLEGKRRTVHKEDVAAAVQNTDLFDFLVDVV 113
>01_05_0464 - 22470963-22472291
Length = 442
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/106 (32%), Positives = 62/106 (58%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
+ +FW ++I+ ++DF A+P+AR+KKI+ + M++ + P +K E+F+
Sbjct: 22 MDEFWRDRQKEIE--TTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQ 79
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIVPRXEVK 626
EL +RAW+ + + R + DIA AI ++ +D L+DI+ VK
Sbjct: 80 ELAVRAWASAQSHNRCIILDTDIAKAIASTESYDFLVDILHNHRVK 125
>01_01_0018 + 139150-140415
Length = 421
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/100 (33%), Positives = 59/100 (59%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
+ +FW ++I+ ++DF A+P+AR+KKI + M+S + P +K E+F+
Sbjct: 22 MDEFWRDRQKEIE--TTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQ 79
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIV 608
EL +RAW+ + + R + DIA AI ++ +D L+DI+
Sbjct: 80 ELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
>01_03_0204 + 13771346-13772680
Length = 444
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/106 (30%), Positives = 60/106 (56%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
+ +FW ++I+ ++DF +P+AR+KKI+ + M++ + P +K E+F+
Sbjct: 22 MDEFWRDRQKEIEM--TKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQ 79
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIVPRXEVK 626
EL RAW+ + + R + DIA A+ ++ +D L+DI+ VK
Sbjct: 80 ELAARAWACAQSHNRCIILDMDIAEAVASTESYDFLVDILHNHSVK 125
>10_02_0162 + 6054823-6055830
Length = 335
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/100 (32%), Positives = 53/100 (53%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
+++FW E I++ S + LP++R+K I+ E M+SA+ P K E+F+
Sbjct: 31 MEKFWRMSQEQIEE--SAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQ 88
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIV 608
EL LRAW + R + DIA AI ++ + L ++V
Sbjct: 89 ELILRAWVCANSHNREIILGTDIAEAITTTESYHFLANVV 128
>05_03_0410 + 13616708-13617691
Length = 327
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/100 (29%), Positives = 52/100 (52%)
Frame = +3
Query: 309 LQQFWDKVLEDIQKVNSEDFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIH 488
+++FW + E I+ S LP+ +K +++ + M+SA+ P K E+F+
Sbjct: 31 MEEFWRRSQEQIEA--SAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQ 88
Query: 489 ELTLRAWSHTEENKRRTLQRNDIATAILKSDQFDXLIDIV 608
ELTLRAW + R + DIA AI ++ + L +++
Sbjct: 89 ELTLRAWVCANSHNRDIILGTDIAEAITTTESYHFLGNVL 128
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P ARIKKIM+ DE+V I+ PVL ++A E+F+ +L R + T ++ +TL +
Sbjct: 10 PAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQ 69
Query: 564 AILKSDQFDXLIDIV 608
+ + FD L ++V
Sbjct: 70 CVRRYSSFDFLTEVV 84
>05_05_0328 +
24130887-24130919,24132207-24132279,24133542-24133635,
24133924-24134037,24134121-24134169,24134364-24134873
Length = 290
Score = 54.4 bits (125), Expect = 8e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P RIKKIM+ DE+V I+ PVL +KA E+F+ +L R + T + +TL + +
Sbjct: 10 PAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLKQ 69
Query: 564 AILKSDQFDXLIDIVPR 614
I + +D L D+V +
Sbjct: 70 CIHSYNVYDFLRDVVSK 86
>01_01_0592 + 4414416-4415132
Length = 238
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Frame = +3
Query: 324 DKVLEDIQKVNSE----DFKTQ--ALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFI 485
D+ E +++V E D Q ALPL R+K+I+++D ++K ++ EA +L A A E+F+
Sbjct: 94 DEATEPMEQVEGEGEDGDAAAQRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFV 153
Query: 486 HELTLRAWSHTEENKRRTLQRNDI-ATAILKSDQFDXLIDIVPRXE 620
L A RR ++ + A A D L+D +P E
Sbjct: 154 GSLAAGAHRAASRRGRRAVRAVHVRAAAREHRPTADFLLDCLPAAE 199
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 34.3 bits (75), Expect = 0.094
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +3
Query: 363 DFKTQALPLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTL 542
D + P+AR+++IM+ ++ S EA L KA EIF+ A+ + +++++++
Sbjct: 200 DHGAGSFPMARVRQIMRAEDATIRPSNEAVFLINKATEIFLKRFADDAYRNALKDRKKSI 259
>07_03_0791 + 21539069-21539257,21539493-21539711
Length = 135
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P+ RI + +K + + + A APV A E E+ A + +NK+ + I
Sbjct: 28 PVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQL 87
Query: 564 AILKSDQFDXLIDIV 608
A+ ++ L+ V
Sbjct: 88 AVRNDEELSRLLGTV 102
>12_02_0605 - 20924385-20924606,20924705-20924899
Length = 138
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P+ RI + +K + + + A APV + E E+ A + +NK+ + I
Sbjct: 30 PVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQL 89
Query: 564 AILKSDQFDXLIDIV 608
A+ ++ L+ V
Sbjct: 90 AVRNDEELSRLLGAV 104
>12_02_0151 - 14468480-14468698,14468902-14469090
Length = 135
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P+ RI + +K + + + A APV A E E+ A + +NK+ + I
Sbjct: 28 PVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQL 87
Query: 564 AILKSDQFDXLI 599
A+ ++ L+
Sbjct: 88 AVRNDEELTKLL 99
>07_03_0790 + 21536389-21536577,21536854-21537072
Length = 135
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P+ RI + +K + + + A APV A E E+ A + +NK+ + I
Sbjct: 28 PVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQL 87
Query: 564 AILKSDQFDXLI 599
A+ ++ L+
Sbjct: 88 AVRNDEELTKLL 99
>03_05_0949 + 29089293-29089487,29089592-29089810
Length = 137
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P+ RI + +K + + + A APV + E E+ A + +NK+ + I
Sbjct: 30 PVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQL 89
Query: 564 AILKSDQFDXLIDIV 608
A+ ++ L+ V
Sbjct: 90 AVRNDEELSRLLGTV 104
>03_02_0562 - 9469263-9469517,9469619-9469843
Length = 159
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P+ RI + +K + I APV A E E+ A + +NK+ + +
Sbjct: 40 PVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLL 99
Query: 564 AILKSDQFDXLI 599
AI ++ L+
Sbjct: 100 AIRNDEELGKLL 111
>05_05_0119 - 22512228-22512500,22512577-22512795
Length = 163
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +3
Query: 384 PLARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIAT 563
P+ RI + +K + I APV A E E+ A + +NK+ + +
Sbjct: 38 PVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLL 97
Query: 564 AILKSDQFDXLI 599
AI ++ L+
Sbjct: 98 AIRNDEELGKLL 109
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 486 HELTLRAWSHTEENKRRTLQRNDIATAILKSDQFD 590
HEL +WS +E + +T RN+ I SD ++
Sbjct: 2916 HELVQYSWSDVQERRSQTEYRNEEILDIFVSDLYE 2950
>01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,
4256034-4256255,4256829-4257023,4257097-4257243,
4257323-4257472,4257762-4257892,4257978-4258194
Length = 845
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/99 (22%), Positives = 41/99 (41%)
Frame = +3
Query: 390 ARIKKIMKLDEEVKMISAEAPVLFAKAAEIFIHELTLRAWSHTEENKRRTLQRNDIATAI 569
A + K K D ++M + + AE+++ E ++ ++ L +D+
Sbjct: 712 AALSKDPKFDH-IEMEEKQKVINQCSEAEVWLRE-KIQQQDALPKHANPVLLSSDLKKKA 769
Query: 570 LKSDQFDXLIDIVPRXEVKPTKPRYDPXRESPKXGSVLP 686
D+F I + P+ KP P P E+P G+ P
Sbjct: 770 ETVDRFCKPIMMKPKPAPKPQTPPQTPPTETPAGGAQTP 808
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,788,137
Number of Sequences: 37544
Number of extensions: 268279
Number of successful extensions: 681
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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