Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0694
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   156   4e-39
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   154   1e-38
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  156 bits (378), Expect = 4e-39
 Identities = 78/176 (44%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
 Frame = -3

Query: 631 RLGLDXLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGL 452
           ++GL   Y G T+  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL
Sbjct: 112 KVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGL 171

Query: 451 NVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGV 272
            +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  I  G+
Sbjct: 172 FIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGI 231

Query: 271 XADAIEAXYKKAHEAIRADPS--XXXXXXXXXXXXXKRWNKRKLTLAERKNRIKQK 110
            +D +E  Y +A+  IR DPS                ++ +RKLT  ERK R   K
Sbjct: 232 ESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = -2

Query: 749 HIVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARRLFPK 630
           +++   +S ELPRYG+K G  N+ AAY+TGLL+ARR   K
Sbjct: 73  YVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAK 112


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  154 bits (374), Expect = 1e-38
 Identities = 78/176 (44%), Positives = 108/176 (61%), Gaps = 2/176 (1%)
 Frame = -3

Query: 631 RLGLDXLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGL 452
           ++GL   Y G T+  G+    E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL
Sbjct: 112 KVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGL 171

Query: 451 NVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGV 272
            +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ +++QFS  I  G+
Sbjct: 172 FIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGI 231

Query: 271 XADAIEAXYKKAHEAIRADPS--XXXXXXXXXXXXXKRWNKRKLTLAERKNRIKQK 110
            +D +E  Y +A+  IR DPS                +  +RKLT  ERK R   K
Sbjct: 232 ESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = -2

Query: 749 HIVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARRLFPK 630
           +++   +S ELPRYG+K G  N+ AAY+TGLL+ARR   K
Sbjct: 73  YVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAK 112


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 352  AEYMRSLEQDDEDSFKRQFSKYIK 281
            +EY+++L   D  SFK+ F K+I+
Sbjct: 948  SEYLQALSNLDSRSFKQFFQKFIQ 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,708
Number of Sequences: 5004
Number of extensions: 49863
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)