Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0694
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   176   2e-44
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   175   3e-44
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871...    28   9.1  

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  176 bits (428), Expect = 2e-44
 Identities = 88/182 (48%), Positives = 122/182 (67%)
 Frame = -3

Query: 625 GLDXLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNV 446
           GLD  Y G  + TG++Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++
Sbjct: 112 GLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDI 170

Query: 445 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVXA 266
           PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + F+  FS+Y+K G+ A
Sbjct: 171 PHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDA 230

Query: 265 DAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRKLTLAERKNRIKQKKASFIKRL 86
           D +EA YKK H AIRADP+             KR+N +KLT        +Q+KAS ++RL
Sbjct: 231 DGMEALYKKVHAAIRADPT-MAKSTKKEPATHKRYNLKKLT-------YEQRKASLVERL 282

Query: 85  QA 80
            A
Sbjct: 283 NA 284



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -2

Query: 746 IVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARRL 639
           ++ A YSHELPRYG++VG TNYAAAY TGLLLARR+
Sbjct: 72  VMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRV 107


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  175 bits (426), Expect = 3e-44
 Identities = 87/182 (47%), Positives = 122/182 (67%)
 Frame = -3

Query: 625 GLDXLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNV 446
           GLD  Y G  + TG++Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++
Sbjct: 112 GLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDI 170

Query: 445 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVXA 266
           PHS KRF G+  + K+ ++++HR +I+G HVA+YMRS+ +++ + F+  FS+Y+K G+ A
Sbjct: 171 PHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDA 230

Query: 265 DAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRKLTLAERKNRIKQKKASFIKRL 86
           D +E+ YKK H AIRADP+             KR+N +KLT        +Q+KAS ++RL
Sbjct: 231 DGMESLYKKVHAAIRADPT-MAKSTKKEPATHKRYNLKKLT-------YEQRKASLVERL 282

Query: 85  QA 80
            A
Sbjct: 283 NA 284



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -2

Query: 746 IVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARRL 639
           ++ A YSHELPRYG++VG TNYAAAY TGLLLARR+
Sbjct: 72  VMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRV 107


>02_04_0562 -
           23886272-23886357,23886456-23886571,23887045-23887127,
           23887683-23887829,23887946-23887993,23888166-23888384,
           23889370-23889541,23889636-23889700,23890386-23890512,
           23891358-23891450,23891520-23891629,23891722-23891868,
           23892161-23892473,23892580-23893178
          Length = 774

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 212 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 108
           +P E+ V ER  + E LE  +  I  EEK+ + +E
Sbjct: 518 LPSEDSVSERRRKLEFLEMQEELIKEEEKKKEKEE 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,924
Number of Sequences: 37544
Number of extensions: 330736
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)