Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0694
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             249   2e-66
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         110   1e-24
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      30   2.3  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   3.0  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   3.0  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               28   7.0  
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  249 bits (610), Expect = 2e-66
 Identities = 117/179 (65%), Positives = 143/179 (79%)
 Frame = -3

Query: 628 LGLDXLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLN 449
           L L  +YTGT DV GDEYNVE VD  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL 
Sbjct: 145 LNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLE 204

Query: 448 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVX 269
           +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S+KRQFS YIK GV 
Sbjct: 205 IPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIKNGVD 264

Query: 268 ADAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRKLTLAERKNRIKQKKASFIK 92
           AD+IE  YK AH+AIRADP              KR++++K++  +R +R+KQKKA+F++
Sbjct: 265 ADSIEGIYKAAHQAIRADP--VHKKAEKKDVQLKRFHRKKMSRQQRVDRVKQKKAAFLR 321



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 26/36 (72%), Positives = 31/36 (86%)
 Frame = -2

Query: 746 IVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARRL 639
           ++ + Y+HELP +GVKVG TNYAAAY TGLLLARRL
Sbjct: 106 VLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRL 141


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  110 bits (265), Expect = 1e-24
 Identities = 47/64 (73%), Positives = 55/64 (85%)
 Frame = -3

Query: 631 RLGLDXLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGL 452
           +L L  +YTGT +V GDEYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL
Sbjct: 49  KLNLHEIYTGTEEVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGL 108

Query: 451 NVPH 440
            +PH
Sbjct: 109 EIPH 112



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 32/39 (82%), Positives = 34/39 (87%)
 Frame = -2

Query: 746 IVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARRLFPK 630
           I+CA Y+HELPRYGVKVG TNYAAAY TGLLLARRL  K
Sbjct: 11  IICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTK 49


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 415 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 281
           D+  K+ NAE+ RA      +++ ++S   D+E +  R+F  + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 450 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 563
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 450 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 563
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -2

Query: 206  QEERVKERLGQTEALEQTQANI---GREEKQNQAKE 108
            QEE + E+ GQ + LEQT+  +   G  +KQ  +KE
Sbjct: 2250 QEEELDEQAGQIQILEQTKLRLEMAGERDKQLISKE 2285


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 405  DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 503
            D+   P   +M   T+RPP T  F+   T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685


>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
 Frame = +3

Query: 111 FCLILFFLSAN--------VSLRLFQRFCLTESFFNS 197
           FCL +FF+S +         S+RLF+ FC+T S F S
Sbjct: 242 FCLSIFFISKDKKEEVLHFFSIRLFKVFCVTLSGFTS 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,051,733
Number of Sequences: 59808
Number of extensions: 386510
Number of successful extensions: 1170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)