Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0694
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   179   2e-45
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   0.66 

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  179 bits (435), Expect = 2e-45
 Identities = 90/185 (48%), Positives = 120/185 (64%), Gaps = 1/185 (0%)
 Frame = -3

Query: 628 LGLDXLYTGTTDVTGDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGL 452
           +GLD  Y G  ++TG++YNVE   D  P  F+  LD+GLARTTTG+++F  MKG  DGG+
Sbjct: 113 IGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVMKGVADGGI 170

Query: 451 NVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGV 272
           NVPHS  RF G+D ESK++NAE HR  I G HVA+YM  L+++DED +KRQFSK++  G+
Sbjct: 171 NVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGL 230

Query: 271 XADAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRKLTLAERKNRIKQKKASFIK 92
            AD + A Y+K H AIRAD S             KR   ++LT  ERK R+  KKA  ++
Sbjct: 231 NADNLVATYQKVHSAIRADAS---PAAKKAAKPSKRHTAKRLTYDERKQRVADKKALLLQ 287

Query: 91  RLQAQ 77
             + Q
Sbjct: 288 LKEQQ 292



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 28/35 (80%), Positives = 32/35 (91%)
 Frame = -2

Query: 746 IVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARR 642
           +V + YSHELPRYG+KVG TNYAAAY+TGLLLARR
Sbjct: 74  VVASAYSHELPRYGLKVGLTNYAAAYATGLLLARR 108


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 574 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 398
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 397 F 395
           F
Sbjct: 128 F 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,535
Number of Sequences: 27780
Number of extensions: 291512
Number of successful extensions: 812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)