Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0694
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   174   6e-44
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   172   2e-43
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    29   2.5  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    29   2.5  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    28   7.6  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  174 bits (423), Expect = 6e-44
 Identities = 85/173 (49%), Positives = 118/173 (68%)
 Frame = -3

Query: 628 LGLDXLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLN 449
           L +D  Y G  + TG++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL+
Sbjct: 113 LEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLD 171

Query: 448 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVX 269
           +PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  FS YIK GV 
Sbjct: 172 IPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVE 231

Query: 268 ADAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRKLTLAERKNRIKQK 110
           A++IE  YKK H AIRADP+             KR+N +KLT  ERKN++ ++
Sbjct: 232 AESIEELYKKVHAAIRADPN-PKKTVKPAPKQHKRYNLKKLTYEERKNKLIER 283



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = -2

Query: 746 IVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARRL 639
           +  + Y+HELP+YG+ VG TNYAAAY TGLLLARR+
Sbjct: 74  VKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRV 109


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  172 bits (419), Expect = 2e-43
 Identities = 84/173 (48%), Positives = 118/173 (68%)
 Frame = -3

Query: 628 LGLDXLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLN 449
           L +D  Y G  + TG++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL+
Sbjct: 113 LEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLD 171

Query: 448 VPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVX 269
           +PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  FS YIK GV 
Sbjct: 172 IPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVE 231

Query: 268 ADAIEAXYKKAHEAIRADPSXXXXXXXXXXXXXKRWNKRKLTLAERKNRIKQK 110
           A++IE  YKK H AIRA+P+             KR+N +KLT  ERKN++ ++
Sbjct: 232 AESIEEMYKKVHAAIRAEPN-HKKTEKSAPKEHKRYNLKKLTYEERKNKLIER 283



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = -2

Query: 746 IVCAVYSHELPRYGVKVGXTNYAAAYSTGLLLARRL 639
           +  + Y+HELP+YG+ VG TNYAAAY TGLLLARR+
Sbjct: 74  VKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRV 109


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 239 SP*SHPCGSIPQEERVKERLGQTEALEQTQANI 141
           SP SHP  S+ Q+ + ++ + QT+ L Q Q  I
Sbjct: 96  SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 239 SP*SHPCGSIPQEERVKERLGQTEALEQTQANI 141
           SP SHP  S+ Q+ + ++ + QT+ L Q Q  I
Sbjct: 96  SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
           SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 203 EERVKERLGQTEALEQTQANIGREEKQNQAKE 108
           E R+KE   + E  ++ +A + +EEK+ Q KE
Sbjct: 750 ERRIKEAREKAELEQRLKATLEQEEKERQIKE 781


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,629
Number of Sequences: 28952
Number of extensions: 265830
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)