Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0692
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    29   0.94 
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.6  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 438  RAFSKRYNLINNSLYSKSHCTCDDMLFDCLKATNTSASHLMGHIY 572
            R F K +NL+   L+  S+C C D +      TN     L G+ Y
Sbjct: 1497 RRFDKLHNLLKGYLWLFSNCICRDNITLSRIGTNCMQQLLSGNAY 1541


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 6   GADGVSLNTMGVTRSEIASDEEDTKRLLRQLSSINRPLEVTFQQMVNLMAQCQQV 170
           G+DG + N  G      + D+E+ +  L  L S++    V  Q+  N   Q Q++
Sbjct: 273 GSDGSNSNFNGGEEQMDSKDQEEIQDYLNSLLSVHEKDGVLLQKFHNSYVQYQKL 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,368
Number of Sequences: 5004
Number of extensions: 53141
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)