Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0692
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    32   0.56 
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    29   3.0  
03_02_0425 + 8353009-8354703                                           29   3.0  
01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041     28   9.1  

>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 483 SKSHCTCDDMLFDCLKATNTSASHLMGHIYFNLVQVPCLEDIPN 614
           S  HC    +L D LK+   S S L+G +   + Q   LED+P+
Sbjct: 390 SSFHCPRRSVLDDRLKSNEYSTSALIGTLLHQVFQAGLLEDVPS 433


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +3

Query: 24  LNTMGVTRSEIASDEEDTKR----LLRQLSSINRPLEVTFQQMVNLMAQCQQVEGVEAQD 191
           LN    TR +  S+ E  K+    L  +L +IN+  E+  Q   +   + +Q+EG ++ +
Sbjct: 146 LNNAETTRVQALSELEKAKKTVEDLTNKLDAINKSKELAIQATEDAKTRTKQLEGGDSLE 205

Query: 192 ETGRE 206
             G++
Sbjct: 206 AVGKD 210


>03_02_0425 + 8353009-8354703
          Length = 564

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 464 KVVAFGECSDFSWAKVMGSTAAVQ*PVSAQVMVIGGYIPS 345
           K  A    S +  + VM +TAA+  P    V V+ G+IPS
Sbjct: 517 KTAALARASTYQTSVVMPATAALAPPGYYMVFVVNGHIPS 556


>01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041
          Length = 609

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 535 VAFKQSNNMSSHVQCDLLYKELLIRL*RLENALTLVGQRSWVL 407
           ++  QS  MSS +  D   KE++++   ++N L L G   WVL
Sbjct: 414 ISLLQSIKMSSSIYSDDFVKEIVVKAYVIKNCLDL-GYNLWVL 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,819
Number of Sequences: 37544
Number of extensions: 362946
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)