BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0692 (750 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 32 0.56 12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 29 3.0 03_02_0425 + 8353009-8354703 29 3.0 01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041 28 9.1 >04_04_0959 + 29692740-29693035,29693102-29693267,29693433-29693612, 29693703-29693771,29693888-29694088,29694187-29694240, 29694325-29694386,29694488-29694620,29694789-29694899, 29695008-29695104,29695638-29695714,29696129-29696194, 29696431-29696583,29697392-29697447,29697524-29697584, 29697656-29697766,29698010-29698144,29698217-29698447, 29699001-29699075,29699161-29699282,29699381-29699453, 29699538-29699642,29699728-29699895,29700079-29700148, 29700224-29700375,29700574-29700651,29700744-29700836, 29700961-29701098,29701237-29701276,29701350-29701423, 29701777-29701911,29702345-29702464,29702778-29702939 Length = 1287 Score = 31.9 bits (69), Expect = 0.56 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +3 Query: 483 SKSHCTCDDMLFDCLKATNTSASHLMGHIYFNLVQVPCLEDIPN 614 S HC +L D LK+ S S L+G + + Q LED+P+ Sbjct: 390 SSFHCPRRSVLDDRLKSNEYSTSALIGTLLHQVFQAGLLEDVPS 433 >12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904, 9911965-9913737 Length = 713 Score = 29.5 bits (63), Expect = 3.0 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = +3 Query: 24 LNTMGVTRSEIASDEEDTKR----LLRQLSSINRPLEVTFQQMVNLMAQCQQVEGVEAQD 191 LN TR + S+ E K+ L +L +IN+ E+ Q + + +Q+EG ++ + Sbjct: 146 LNNAETTRVQALSELEKAKKTVEDLTNKLDAINKSKELAIQATEDAKTRTKQLEGGDSLE 205 Query: 192 ETGRE 206 G++ Sbjct: 206 AVGKD 210 >03_02_0425 + 8353009-8354703 Length = 564 Score = 29.5 bits (63), Expect = 3.0 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -2 Query: 464 KVVAFGECSDFSWAKVMGSTAAVQ*PVSAQVMVIGGYIPS 345 K A S + + VM +TAA+ P V V+ G+IPS Sbjct: 517 KTAALARASTYQTSVVMPATAALAPPGYYMVFVVNGHIPS 556 >01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041 Length = 609 Score = 27.9 bits (59), Expect = 9.1 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -3 Query: 535 VAFKQSNNMSSHVQCDLLYKELLIRL*RLENALTLVGQRSWVL 407 ++ QS MSS + D KE++++ ++N L L G WVL Sbjct: 414 ISLLQSIKMSSSIYSDDFVKEIVVKAYVIKNCLDL-GYNLWVL 455 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,703,819 Number of Sequences: 37544 Number of extensions: 362946 Number of successful extensions: 874 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 857 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 874 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -