Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0692
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                 31   0.76 
SB_13660| Best HMM Match : MtrG (HMM E-Value=3.4)                      29   3.0  
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_26246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   7.0  
SB_47318| Best HMM Match : DUF738 (HMM E-Value=1.4)                    28   7.0  
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_51318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.2)               28   9.3  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   28   9.3  
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)           28   9.3  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 413

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +3

Query: 417 DLCPTKVRAFSKRYNLINNSLYSKSHCTCDDMLFDCLKATNTSASHLMGHIYFNLVQVPC 596
           + CP K+    K+        + K  C+C++          TS  +L  H Y NL  +PC
Sbjct: 205 EFCPEKIYCTRKKLEEHLKKFHKKCDCSCEEFF-------ETSDDYL-EHYYSNL-PLPC 255

Query: 597 LEDIPNGRRFRN 632
           LE+     RF N
Sbjct: 256 LEEPSCNERFPN 267


>SB_13660| Best HMM Match : MtrG (HMM E-Value=3.4)
          Length = 567

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 479 IQQIALHMRRHVIRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           ++++   +    +R  + H Y RLT + P L  P + P +RRH
Sbjct: 153 VERVLQRVHDDTLRGVQKHDYARLTLDAPALKNPIALPFMRRH 195


>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 332 CTRYDALEECERTAAQEPC-VCSSCVQP-RFSRCTAT 228
           CT+Y ALEEC+ TA  + C VC  C +P +   CT T
Sbjct: 546 CTKY-ALEECQCTADNDLCTVC--CKEPGKDDTCTPT 579


>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 479 IQQIALHMRRHVIRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           ++Q+   +    +R  + H Y RLT + P L  P + P +RRH
Sbjct: 153 LEQVLDRVPDDTLRGVQKHDYARLTIDAPALKNPIALPFMRRH 195


>SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 396 DRCCRTHDLCPTKVRAFSKRYNLINNSLYSKSHCTC 503
           ++C RT D+    VR  +    L N + Y  SHC C
Sbjct: 14  EQCSRTADVREHSVREQTGTNRLRNGNSYLPSHCNC 49


>SB_26246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 479 IQQIALHMRRHVIRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           ++++   +    +R  + H Y RLT + P L  P + P +RRH
Sbjct: 27  VERVLDRVHDDTLRGVQKHDYARLTLDAPALKNPIALPFMRRH 69


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 284  EPCVCSSCVQPRFSRCTATLFSPAIELSSRLVLSF 180
            +PC   +C  P +S CTA   SP    +S   L +
Sbjct: 5198 DPCEDYTCTSPPYSECTAINGSPVCTCNSICTLEY 5232


>SB_47318| Best HMM Match : DUF738 (HMM E-Value=1.4)
          Length = 312

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 515 IRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           +R  + H Y R+T + P L  P S P +RRH
Sbjct: 164 LRGVQGHDYARITIDAPSLRNPISLPFMRRH 194


>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1296

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 515 IRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           +R  + H Y RLT + P L  P + P +RRH
Sbjct: 163 LRGVQKHDYARLTLDAPALKNPIALPFMRRH 193


>SB_51318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.2)
          Length = 847

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 515 IRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           +R  + H Y RLT + P L  P + P +RRH
Sbjct: 101 LRGVQKHDYARLTLDAPALKNPIALPFMRRH 131


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 265 EEHTQGSWAAVRSHSSRASYLVQNGAVLGI*PPITMTWALTGYWTAAVEPM 417
           +EH +G W A RS + R SY    GA      P+T         TA + P+
Sbjct: 44  KEHLEGIWCAARSTTRRPSY----GAACIADAPMTRPHLYPSAETAVISPV 90


>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 515 IRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           +R  + H Y RLT + P L  P + P +RRH
Sbjct: 263 LRGVQKHDYARLTLDAPALKNPIALPFMRRH 293


>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
          Length = 1396

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 515 IRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           +R  + H Y RLT + P L  P + P +RRH
Sbjct: 170 LRGVQKHDYARLTLDAPALKNPIALPFMRRH 200


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 447  SKRYNLINNSLYSKSHCTCDDMLF--DCLKATNTSASHLMGHIYFNLVQVPCLEDIPN 614
            S R + IN+     S C  D+  F  +CL A N +  +  G +  N   V CL  I N
Sbjct: 1639 SVRADSINDENNQLSLCRNDEQSFGPECLNAENQAFLNSSGSLQSNKTPVACLPVIDN 1696


>SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 515 IRLFESH*YIRLTSNGPYLF*PSSSPVLRRH 607
           +R  + H Y RLT + P L  P + P +RRH
Sbjct: 188 LRGVQKHDYARLTLDAPALKNPIALPFMRRH 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,518,240
Number of Sequences: 59808
Number of extensions: 418849
Number of successful extensions: 1083
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)