Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0692
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical ...    28   6.2  
U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical p...    28   8.1  
U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical
           protein F02E11.5 protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 336 WCGTGDIAADYHDLGADRLLDRCCRTHDLCPTKVRAFSKRYNLINNSLYSKSH-CTCDDM 512
           W  TG I     + G D+  ++  +   +C      +S R N+INN++Y+    C+    
Sbjct: 143 WASTGSIGCGVKNCGMDK--NKMYKVAVVCQ-----YSARGNMINNNIYTAGKTCSACPA 195

Query: 513 LFDCLKAT 536
              C KAT
Sbjct: 196 KTKCEKAT 203


>U50193-10|AAP68919.1| 1098|Caenorhabditis elegans Hypothetical
            protein ZK328.7b protein.
          Length = 1098

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 394  WTAAVEPMTFAQLKSEHSPNATTLLI-ILYTANRIAHATTCYSTV 525
            WT  ++P         H+  A ++L    Y  +  AHA+T Y+T+
Sbjct: 944  WTLVLQPCQTVIQVDPHNDEANSILADFYYIRSEAAHASTSYTTL 988


>U50193-9|AAA91253.2| 1332|Caenorhabditis elegans Hypothetical protein
            ZK328.7a protein.
          Length = 1332

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 394  WTAAVEPMTFAQLKSEHSPNATTLLI-ILYTANRIAHATTCYSTV 525
            WT  ++P         H+  A ++L    Y  +  AHA+T Y+T+
Sbjct: 944  WTLVLQPCQTVIQVDPHNDEANSILADFYYIRSEAAHASTSYTTL 988


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,308
Number of Sequences: 27780
Number of extensions: 310260
Number of successful extensions: 801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)