Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0692
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put...    30   1.4  
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put...    30   1.4  
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans...    29   2.5  
At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger) fa...    29   4.4  
At1g23090.1 68414.m02887 sulfate transporter, putative similar t...    29   4.4  

>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
           putative / DNA topoisomerase II, putative / DNA gyrase,
           putative similar to SP|O50627 DNA gyrase subunit B (EC
           5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00204: DNA topoisomerase II
           (N-terminal region), PF00986: DNA gyrase, B subunit,
           carboxyl terminus, PF01751: Toprim domain
          Length = 519

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +2

Query: 488 IALHMRRHVIRLFESH*YIRLTSNGPYLF*PSSSPVLRRHS 610
           +AL  R   +RL+    Y+RL  + P LF  S SP L RHS
Sbjct: 1   MALLQRASYLRLY----YLRLMGSRPRLFSSSLSPALHRHS 37


>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
           putative / DNA topoisomerase II, putative / DNA gyrase,
           putative similar to SP|O50627 DNA gyrase subunit B (EC
           5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00204: DNA topoisomerase II
           (N-terminal region), PF00986: DNA gyrase, B subunit,
           carboxyl terminus, PF01751: Toprim domain
          Length = 732

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +2

Query: 488 IALHMRRHVIRLFESH*YIRLTSNGPYLF*PSSSPVLRRHS 610
           +AL  R   +RL+    Y+RL  + P LF  S SP L RHS
Sbjct: 1   MALLQRASYLRLY----YLRLMGSRPRLFSSSLSPALHRHS 37


>At2g13150.1 68415.m01450 expressed protein contains a bZIP
           transcription factor basic domain signature (PDOC00036)
          Length = 262

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 51  EIASDEEDTKRLLRQLSSINRPLEVTFQQMVNLMAQCQQVEGVEA 185
           E+ASD ++ +R+L+   S  R  +   Q M+NL  +   +E   A
Sbjct: 145 EVASDPKEVRRILKNQESAARSKQKKLQYMINLELKINFLENKNA 189


>At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 283

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
 Frame = +3

Query: 303 TLLQGIIPGTKWCGTGDIAADYHDLGADRLLDRCCRTHDLCPTKVRAFSKRYNLINNSLY 482
           +LL  ++   K   +  +     DL A  LL   C TH L P  + A +  +  I  + Y
Sbjct: 74  SLLHPLLIHRKHHSSYAVTMKLRDLDAVVLLLFLCETHQLHPDVLEASADNWREILGNTY 133

Query: 483 SKSHCTCDDMLFDCLKATNTSASHLMGHIYFNLVQVPCLEDIPNG---RRFRNAKEGF 647
           S +  + +  L+ C       A  LM +I   LV+     DI  G    R R+ KEG+
Sbjct: 134 SNNMLSNNSGLWTC------DAGILMPYIE-TLVRCKRFVDIMGGYNHLRRRDQKEGY 184


>At1g23090.1 68414.m02887 sulfate transporter, putative similar to
           sulfate transporter [Arabidopsis thaliana] GI:2285885;
           contains Pfam profiles PF00916: Sulfate transporter
           family, PF01740: STAS domain
          Length = 631

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +1

Query: 283 SWAAVRSHSSRASYLVQNGAVLGI*PPITMTWALTGYWTAAVEPMTFAQLKSEHSPNATT 462
           SW  ++ H S  + + + G V GI   +++T  +      AV   TFA LK+ H  +   
Sbjct: 298 SWNMLQFHGSHLALVAKTGLVTGI---VSLTEGI------AV-GRTFAALKNYH-VDGNK 346

Query: 463 LLIILYTANRIAHATTCYST 522
            +I +   N +  AT+CY T
Sbjct: 347 EMIAIGLMNVVGSATSCYVT 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,803,838
Number of Sequences: 28952
Number of extensions: 286355
Number of successful extensions: 777
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)