Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0690
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   1.6  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    27   3.8  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   6.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.6  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   8.7  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   8.7  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   8.7  

>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 381 IIYRYTHSTEFTLKCIFITSPFINCFVNVILLNKRHKIREVKKN 512
           +I  Y+ ST    + +F++S F NCF  V  L  +   R ++KN
Sbjct: 311 LITNYSLSTSSKERMLFLSSYFENCFKGVKSLEFKIWSRSLRKN 354


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 23/63 (36%), Positives = 29/63 (46%)
 Frame = +1

Query: 4   STVIFWLRKSVQSFLI**MTWFILLLKQLF*RLERTDILSLTISHLFCFLAHMSSFIYFK 183
           S +IFWL K V S LI   + +I +      RL       LT+  LFC L    S +Y  
Sbjct: 100 SLLIFWLLKVVTSLLILLFSPYIAITSMA--RL-------LTLITLFCSLVCFISEVYVP 150

Query: 184 ACN 192
            CN
Sbjct: 151 PCN 153


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 395 YA*HRIYSQMYLHNKPIYQ-LLCKC 466
           Y+ H  Y Q Y H  P+++ ++C+C
Sbjct: 303 YSFHDAYLQSYTHRYPVHRAIMCRC 327


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 547 FLLPLIPQNTLSFFFTSRILWRLLSNITFTKQL 449
           F+  +IP  T+ F F  RILWR L    F  Q+
Sbjct: 175 FVSGIIP--TVKFQFLERILWRTLRGNLFIHQV 205


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 157  VPENRISGLSSVTVCQFFPTFKII 86
            VP   +SG   + + +F+PTF +I
Sbjct: 1942 VPGTYVSGKPVIRIVKFYPTFNVI 1965


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 404 HRIYSQMYLHNKPIYQLLCKCYIAQQ 481
           HRI +   L++ P+ Q L KC+I  +
Sbjct: 276 HRINADHKLNSLPLLQQLVKCFIVNE 301


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -2

Query: 533 NSPKYPFILLHFS-----NFMAFVEQYNIYKAVDKWACYEDTFES 414
           +S  Y  ILLH       +F+ FV ++NI   +D    +EDT E+
Sbjct: 285 SSHSYYNILLHVDQEMLRDFVDFVMKHNIKTVIDSVYDFEDTVEA 329


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 404 HRIYSQMYLHNKPIYQLLCKCYIAQQ 481
           HRI +   L++ P+ Q L KC+I  +
Sbjct: 276 HRINADHKLNSLPLLQQLVKCFIVNE 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,544
Number of Sequences: 5004
Number of extensions: 61887
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)