Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0690
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0628 + 11364169-11364233,11365135-11365648                       29   3.9  
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    28   6.9  
01_05_0323 - 20934429-20934447,20934658-20934774,20934815-209349...    28   9.1  

>09_02_0628 + 11364169-11364233,11365135-11365648
          Length = 192

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = -2

Query: 551 TIPSSIN-SPKYP-----FILLHFSNFMAFVEQYNIYKAVDKW 441
           ++P +I  SP +P     F  LHF+NF   + Q +IY   +KW
Sbjct: 79  SVPLNITQSPNWPTDWTYFHFLHFANFEQQLRQLDIYYGKNKW 121


>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 323 CIYTDASKSDQGVSLAYYHNNIKVGYGFGLPPSSSIFT 210
           C Y + ++  +  SLAY HN I  G   G+ P   IFT
Sbjct: 468 CRYCE-NRQQRESSLAYNHNAIAAGRIDGIDPMEQIFT 504


>01_05_0323 -
           20934429-20934447,20934658-20934774,20934815-20934964,
           20935578-20935828,20936403-20936449,20936852-20936976,
           20937039-20937154,20937194-20937284,20937772-20937893,
           20938667-20938894,20938990-20939221,20941598-20941797
          Length = 565

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -3

Query: 544 LLPLIPQNTLSFFFTSRILWRLLSNITFTKQLINGLVMKIHLR---VNSVLCVYL*IMTL 374
           L+ +I    ++ F T  ++W L+    F K + +     +H+    + +++C +L I T 
Sbjct: 157 LVGVINPGRMTLFGTLLVIWGLVKEALFGKPVNSDPTQSVHVYPTILIALICAFLSI-TY 215

Query: 373 NLKKT 359
           N+KKT
Sbjct: 216 NVKKT 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891,785
Number of Sequences: 37544
Number of extensions: 340128
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)