Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0690
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)                 36   0.035
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       33   0.25 
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)                    29   3.0  
SB_17122| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)                    28   7.0  
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         28   9.3  

>SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)
          Length = 942

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 84  AIILKVGKN*HTVTDDKPLILFSGTYVFFYIFQGMQYSKCFCCEN 218
           A +   G+   T+TDD  + LF G  V+  IF   ++++C+ CE+
Sbjct: 782 AFLDMTGQTDGTITDDSDVFLFGGRRVYKNIFNQNKHAECYTCED 826


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
 Frame = -2

Query: 380  DLKSKEDFDQHITEWPDFHC---IYTDASKSDQGVSLAYYHN--NIKVGY-GFGLPPSSS 219
            DL  +      I  +PDF+    +YTDAS    G++L    N   + + Y G  L PS  
Sbjct: 940  DLLKRALVSAPILAYPDFNLTFQLYTDASAEGIGLTLGQIQNGREVVISYAGRDLSPSER 999

Query: 218  IFTA---EALAILHALKY 174
             F+A   EALA++  ++Y
Sbjct: 1000 NFSASEREALALVTGIRY 1017


>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
          Length = 960

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = -3

Query: 298 QIKEYH*PIITTILRLDMDLVYHLHPAFSQQKHLLYCMP*NI*KKTYVPENRISGLSSVT 119
           Q+  YH  +   ++R + D V+H     + ++HLL C+P N      V ENR     SV 
Sbjct: 236 QLITYHLYMDNLLIRKNNDGVFHNIILDAVERHLLTCVPIN---DAGVGENR---SVSVN 289

Query: 118 VCQFFPTFKIIALAIE*TMSSIIL 47
           V +  PT  I  L       S+++
Sbjct: 290 VTEKLPTISITHLRATVNEGSVVV 313


>SB_17122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 384 IYRYTHSTEFTLKCIFITSPFINCFVNVILLNKRHKIREVKKNERVFWGINGRRNSL 554
           +YR+  +  +T   +F+ + FI   +N+I        REV++  +VF   N  R  L
Sbjct: 196 LYRFESNIPYT---VFLEALFIGLPLNIIAFCYLSVFREVRRTNKVFTSANATRAEL 249


>SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)
          Length = 343

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 126 DDKPLILFSGTYVFFYIFQGMQYSKCFCCENAG 224
           ++ P I   G     ++F G+Q+S CFC  + G
Sbjct: 130 NNTPAICIEGCAAKGFLFAGVQHSDCFCGNSYG 162


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 535 LIPQNTLSFFFTSRILWRLLSNITFTKQLINGLVMKIHLRV 413
           +I  + + FFF+  + WRL + IT T+ + N L   ++ R+
Sbjct: 585 IIEADEVDFFFSFTVYWRLKTPITPTEFVNNDLFGNVNKRL 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,191,325
Number of Sequences: 59808
Number of extensions: 409219
Number of successful extensions: 947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)