Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0690
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    48   1e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       48   1e-05
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    29   5.1  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    29   5.1  
AY113457-1|AAM29462.1|  825|Drosophila melanogaster RE36839p pro...    29   6.8  

>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
 Frame = -2

Query: 320  IYTDASKSDQGVSLAYYHNNIKVGYGFGLPPSSSIFTAEALAILHALKYIKEDICARKQN 141
            I+TD SK +  +S A       + YG  LPP SS+ T+E +AIL A++  K      ++ 
Sbjct: 951  IFTDGSKINYTISFAITTETDVLKYGI-LPPYSSVLTSETIAILEAIELTK-----NRRG 1004

Query: 140  KWLIVSDSMSV---LSNL*NNCF-SNRINHVI-YHIKKL 39
            K++I SDS+S    + N  NN F  +RI  +I  H  K+
Sbjct: 1005 KFIICSDSLSAVDSIQNTNNNSFYPSRIRSLITQHAPKI 1043


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 33/91 (36%), Positives = 48/91 (52%)
 Frame = -2

Query: 320  IYTDASKSDQGVSLAYYHNNIKVGYGFGLPPSSSIFTAEALAILHALKYIKEDICARKQN 141
            IYTD SK     + A   +N K+  G  LP  +SIFTAEA AIL A ++      ++   
Sbjct: 965  IYTDGSKVTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKACQF-----ASKNAG 1019

Query: 140  KWLIVSDSMSVLSNL*NNCFSNRINHVIYHI 48
            K +I +DS+S LS + N   ++     + HI
Sbjct: 1020 KSVICTDSLSSLSAIRNWNHNDPTTQEVRHI 1050


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = -2

Query: 347 ITEWPDFH---CIYTDASKSDQGVSLAYYHN--NIKVGY---GFGLPPSSSIFTAEALAI 192
           + ++PDF    CI TDASK   G  L   HN   + V Y    F    S+   T + LA 
Sbjct: 606 LLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAA 665

Query: 191 LH 186
           +H
Sbjct: 666 IH 667


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = -2

Query: 347 ITEWPDFH---CIYTDASKSDQGVSLAYYHN--NIKVGY---GFGLPPSSSIFTAEALAI 192
           + ++PDF    CI TDASK   G  L   HN   + V Y    F    S+   T + LA 
Sbjct: 369 LLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAA 428

Query: 191 LH 186
           +H
Sbjct: 429 IH 430


>AY113457-1|AAM29462.1|  825|Drosophila melanogaster RE36839p
           protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
 Frame = -2

Query: 368 KEDFDQHITEWPDFH---CIYTDASKSDQGVSLAYYHNNI--KVGY---GFGLPPSSSIF 213
           K+  +  + ++PDF    CI TDASK   G  L   +N I   V Y    F    S+   
Sbjct: 493 KQLMNPTLLKYPDFSKEFCIITDASKEACGAVLTQNYNGIHLPVAYASRSFTKGESNKST 552

Query: 212 TAEALAILH-ALKYIKEDICAR 150
           T + L+ +H A+ + K  I  R
Sbjct: 553 TEQELSAIHWAINHFKPYIYGR 574


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,743,715
Number of Sequences: 53049
Number of extensions: 601383
Number of successful extensions: 1445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)