Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0690
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    29   2.7  
AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical...    29   2.7  
Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = -2

Query: 446 KWACYEDTFESKFCAM-RISINNDLKSKEDFDQHITEWPDFHCIYTDASKSDQGVSLAYY 270
           K+ C       + C +  + +NN +    D+DQHI      HC+   A K  Q       
Sbjct: 156 KYVCNPKNVRKENCTLLSLGLNNQI----DYDQHIQNVTGGHCVILGADKDPQNPETQET 211

Query: 269 HNNIKVGYGFGLPP 228
           +  I      GL P
Sbjct: 212 YRKINGKLFSGLIP 225


>AF016430-10|AAB65374.1|  467|Caenorhabditis elegans Hypothetical
           protein C05C8.7 protein.
          Length = 467

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = -3

Query: 313 LTPQNQIKEYH*PIITTILRLDMDLVYHLHPAFSQQKHLLYCMP*NI*KKTYVPENRISG 134
           LT  N  K  H P I  ++ +   L   +HP   Q + L    P +   + + PE   + 
Sbjct: 74  LTNNNSAKNIHLPFIMKVMSIRTTLSLQVHPTKEQARRLHEKDPIHYPDRNHKPELAYAL 133

Query: 133 LSSVTVCQFFPTFKII 86
                +C F P  +I+
Sbjct: 134 TRFELLCGFRPAREIL 149


>Z49937-1|CAA90184.2|  670|Caenorhabditis elegans Hypothetical
           protein F14F3.2 protein.
          Length = 670

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -2

Query: 218 IFTAEALAILHALKYIKEDICARKQNKWLIVSDSMSVLSNL*NNCFSNRINHVIYHIKKL 39
           ++TAEAL ++ +L+  + D C +K+ +W  V     + S     CF + +   + +++ L
Sbjct: 1   MYTAEALDLITSLEQKECDDCGKKEVEWASVKKGTVICSEC--FCFHSYLGPSVSYLRHL 58


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 550 LFLLPLIPQNTLSFFFTSRILWRLLSNITFTKQLIN 443
           L +LPL+ QN L FF  S I  +   +I   +++IN
Sbjct: 475 LLVLPLVDQNILKFFVISSIYKQGKKSIIDVQEIIN 510


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 428  DTFESKFCAMRISINNDLKSKEDFDQHITEWPDFHCIY 315
            + F ++F +  +S   + +SK+ FDQ I  W DF  I+
Sbjct: 1616 EQFYNQFFSEAVSAEIE-ESKQKFDQFIATWQDFFFIF 1652


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,349,080
Number of Sequences: 27780
Number of extensions: 333407
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)