Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0690
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    31   1.1  
At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containi...    30   1.4  
At3g10930.1 68416.m01318 expressed protein                             30   1.9  
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro...    29   4.4  
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi...    28   5.8  

>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = -2

Query: 311 DASKSDQGVSLAYYHNNIKVG---YGFGLPPSSSIFTAEALAILHALKYIKEDICARKQN 141
           D+S   Q  SL  Y+N+++     +GF +P SSS  + E     H L+YI E+   R  N
Sbjct: 209 DSSMDFQMFSL--YNNSLENDNNQFGFSVPLSSSSSSNEVCNPNHILEYISENSDTRNTN 266

Query: 140 KWLIVSDSMSVLSNL 96
           K  I  D+MS  S L
Sbjct: 267 KKDI--DAMSYSSLL 279


>At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 447 INCFVNVILLNKRHKIREVKKNERVFWGINGRRN 548
           +NCFV   LL+   K R+++   R+F  +  +RN
Sbjct: 297 LNCFVKTALLDMHAKCRDIQSARRIFNELGTQRN 330


>At3g10930.1 68416.m01318 expressed protein
          Length = 101

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -2

Query: 572 RKLQHSQ--TIPSSINSPK-YPFILLHFSNFMAFVEQYNIYKAVDKWACYEDTFESKFCA 402
           RKL  S+  TI S +  P  Y F+ L F + + F  Q  I   V    C  + +      
Sbjct: 15  RKLTTSRLSTILSRVFCPNSYFFLFLFFRDSLIFRFQIEIIVNV---TCITEIYSRSLGK 71

Query: 401 MRISINNDLKSKEDFDQHITEWPDF 327
           MRI   N  ++ +D D H+  +  +
Sbjct: 72  MRILFGNVSRNDQDLDYHLVSFHQY 96


>At1g04160.1 68414.m00406 myosin family protein contains Pfam
            profiles: PF02736 myosin N-terminal SH3-like domain,
            PF00063 myosin head (motor domain), PF00612 IQ
            calmodulin-binding motif, PF01843: DIL domain
          Length = 1500

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 479  VEQYNIYKAVDKWACYEDTFESKFCAMRISINNDLKSKEDFDQHITEW 336
            +  + IYK +  W C+E    S F  +   I + +++++D + H+  W
Sbjct: 1122 IAAFTIYKCLLHWKCFESEKTSAFDRLIEMIGSAIENEDD-NGHLAYW 1168


>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
            to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
            thaliana]
          Length = 1505

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 479  VEQYNIYKAVDKWACYEDTFESKFCAMRISINNDLKSKEDFDQHITEW 336
            V  + IYK +  W C+E    + F  +   I + +++++D + H+  W
Sbjct: 1124 VAAFTIYKCLLHWKCFESEKTNVFDRLIQMIGSAIENEDD-NSHLAYW 1170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,741
Number of Sequences: 28952
Number of extensions: 302807
Number of successful extensions: 726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)