Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0689
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    27   0.21 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.21 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.28 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.4  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   4.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   6.0  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    22   6.0  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 302 FKMHRHFLCLSLFIFAGYCDANYCRDANLCCPGRDS-SCVVQKAHQN 439
           F   +H+   +    AG+   +  R+    C  +D  SC++ K H+N
Sbjct: 44  FSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRN 90


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 302 FKMHRHFLCLSLFIFAGYCDANYCRDANLCCPGRDS-SCVVQKAHQN 439
           F   +H+   +    AG+   +  R+    C  +D  SC++ K H+N
Sbjct: 44  FSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRN 90


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +2

Query: 356 CDANYCRDANLCCPG-RDSSCVVQKAHQNAIIEDLTDKPCYCDHACLKLGDCCPDFRET 529
           C  N CR+   C     D  C  +   +    +  + K  +CDH   K G  C D  +T
Sbjct: 110 CSPNPCRNNGSCVDRIADFECNCKNGWKG---KTCSLKDSHCDHTTCKNGGTCQDLGKT 165


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 570 HEPQLETTQSITPQVSRKSGQQSPNFK 490
           HEP L TT+ +  +   K  QQ   FK
Sbjct: 244 HEPLLITTEKLAAEGQTKLPQQPKLFK 270


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 401 SPGSTGSRPGNSSHRNSP 348
           SPG+   R GNS   N+P
Sbjct: 165 SPGAAAGRTGNSLSWNNP 182


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 107 RPIEGTRFHTKFIIYHSQFFGH 172
           RP     FH ++  Y ++++GH
Sbjct: 433 RPPGDPAFHNQYAHYPAEYYGH 454



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 558 AGARGRNAIPPAALGAWCER 617
           A  +  +A  P A+G WC R
Sbjct: 259 ASQQSLDASDPDAMGKWCPR 278


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 265 TSLICILFFFLNRNIIKSL 209
           T +  + FF +NRN+ KSL
Sbjct: 382 TDISLVGFFDVNRNLFKSL 400


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 558 AGARGRNAIPPAALGAWCER 617
           A  +  +A  P A+G WC R
Sbjct: 103 ASQQSLDASDPDAMGKWCPR 122


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 97  LISKTNRRHPFPY 135
           L  K N RHPF Y
Sbjct: 112 LPDKVNERHPFAY 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,850
Number of Sequences: 336
Number of extensions: 4426
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)