Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0689
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    31   0.23 
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    29   0.94 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.6  
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    27   2.9  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   5.0  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   8.7  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = -2

Query: 560 SLKQRNRSLRKSPGSPGNNLPISSKRGHSNRACRLGPQ*WRSGAPSERRRNYPSP 396
           S  Q N+ L KS  SP  N PI S   H N       +  +SGA    +  Y SP
Sbjct: 550 STVQTNKYLPKSSASPPANAPIVSSDVHKNENAGTARRAPQSGAFVASKAKYSSP 604


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = +2

Query: 434 QNAIIEDLTDKPCYCDHACLKLGDCCPDFRETCGVIDCVVSSWGSWSECDTTCGSGSMVR 613
           Q+ I E L+ K  Y D   ++LGD          ++D  V  W    E +    SG M++
Sbjct: 46  QSTISEILSPKYSYLDDGSVRLGDIKKIRAPKFPLLDNAVYEWLQQREVEGLPISGDMIK 105

Query: 614 ---TRRIVQAPAHGRSALP 661
              TR   + PA+    LP
Sbjct: 106 QAATRFWSKIPAYASLPLP 124


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +2

Query: 356 CDANYCRDANLCCPGRD--SSCVVQKAHQNAIIEDLTDKPCYCDHACLKLGDCCPDFRET 529
           C  ++C    LC P  +  SSC  +   +    E +   PC+  H C +   C      +
Sbjct: 708 CKTHFCE--KLCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVS 765

Query: 530 C 532
           C
Sbjct: 766 C 766


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 552 FQAGARGRNAIPPAALGAWCERVGSCKPQRMGG 650
           +Q    GRN +   A G WC     CK    GG
Sbjct: 37  YQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGG 69


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 177 ISGVNFKNNLSKLL-IIFLFRKKNNIHIKEVCLLYI 281
           I+G+++  ++S L   +    + NN+ +K++C LY+
Sbjct: 39  IAGISYGYDMSSLFPSVISSMESNNLELKKLCYLYL 74


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/90 (25%), Positives = 32/90 (35%)
 Frame = -2

Query: 563 PSLKQRNRSLRKSPGSPGNNLPISSKRGHSNRACRLGPQ*WRSGAPSERRRNYPSPGSTG 384
           P L     ++R +P    NN+P+S            G     S +   + ++  S     
Sbjct: 97  PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSDFQSKDSLSTTQPS 156

Query: 383 SRPGNSSHRNSPRK*TSLDKENGGAF*IRN 294
              GN S   SP    SLD E    F I N
Sbjct: 157 VSGGNGSTSQSP---PSLDVEQNKPFSISN 183


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 612 RTMLPEPQVVSHSD---HEPQLETTQSITP 532
           + M+P P++V+H D    E +L     ITP
Sbjct: 550 KLMIPSPKIVTHGDAMQEEQRLRQKSQITP 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,640
Number of Sequences: 5004
Number of extensions: 69179
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)