Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0689
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 37 0.015
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 36 0.026
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 31 0.98
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 31 1.3
05_07_0089 - 27619053-27620138 31 1.3
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 29 3.0
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 29 3.0
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 29 3.9
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 29 5.2
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438... 29 5.2
09_02_0343 + 7514514-7514948 28 6.9
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 28 6.9
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 28 6.9
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192... 28 6.9
09_04_0685 + 19454234-19454399,19454500-19454819,19455337-19455594 28 9.1
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 28 9.1
05_06_0171 - 26127547-26127592,26127955-26128079,26128187-261283... 28 9.1
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 28 9.1
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 28 9.1
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 28 9.1
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 9.1
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 37.1 bits (82), Expect = 0.015
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = +3
Query: 507 VARTSGRLAE*SIALFQAGARGRNAIPPAALGAWCERVGSCKPQRMGGRHCPSLVQRRAC 686
V R RL +A + ARG PP L CE+ +C Q G CP L++R A
Sbjct: 40 VVRVRLRLTPAPVATAEDAARGGKMPPPPPLPTSCEQEEACVEQEGRGGPCPLLLRRGAT 99
Query: 687 QEHQ 698
+ Q
Sbjct: 100 PDDQ 103
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 36.3 bits (80), Expect = 0.026
Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Frame = -2
Query: 665 RGAVPTSHALGLARSYAFAPCSQSRRWYRIPTTSPSLKQRNRSLRKSPGSPGNNLPISSK 486
R A+P A A P S R PS ++ + + P SP P S
Sbjct: 210 RFALPPQQQRAAASPKALHP-SPKRDVVDHNKVGPSAEKATKQQPRKPASPQRK-PAPSP 267
Query: 485 RGHSNRACRLGPQ*WRSGAPSERRRNYPSP----GSTGSRPGNSSHRNSP 348
R S + R+ R +P RRR PSP G+ RPG+ R SP
Sbjct: 268 RRRSPPSRRVESPRCRPDSPPIRRRTAPSPIRHGGTPSRRPGSPIRRRSP 317
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 705 STPDVLGMPSAGPARGSADLPCAGACTILRVRTMLPEPQVVSHSDHEPQL-ETTQSITPQ 529
S P + + S + + + A + R + + P P +V+H H P E TQ+ TP
Sbjct: 110 SKPRLPSIRSCFRGKKNKERKANAAAVVARRQALTPAPSLVTHPPHSPSTPEKTQAATPS 169
Query: 528 VSR 520
++
Sbjct: 170 ATQ 172
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 528 LAE*SIALFQAGARGRNAIPPAALGAWCER-VGSCKPQRM 644
+AE S+ +F+ G+ AIPPAA + + G+C P+ M
Sbjct: 58 MAETSVIIFETRQGGQAAIPPAASSEFIVKDTGNCSPRLM 97
>05_07_0089 - 27619053-27620138
Length = 361
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = -1
Query: 711 PMSTPDVLGMPSAGPARGSADLPCAG--ACTILRVRTMLPEPQVVSHSDHEPQLETTQSI 538
P +TP+ + G A+G + PC G A V P ++ SH H PQ + Q
Sbjct: 42 PTATPNNNVVAGMGGAKGGSGTPCGGDAAAASPVVEAAAPAVEMSSHHQH-PQQQQQQGA 100
Query: 537 TPQVSRKSGQQSPNFKQAWSQ 475
Q S S + + SQ
Sbjct: 101 AVQRSVGPSSSSSSSSSSASQ 121
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 443 WRSGAPSERRRNYPSPGSTGSRPGNSSHRNSPRK*TSLDKE 321
+ S PS R+RN GST +P N H + T +D++
Sbjct: 477 FESRGPSSRKRNLEEGGSTADKPLNRLHPADSIEGTVIDRD 517
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +2
Query: 113 IEGTRFHTKF---IIYHSQFFGHLYKRC 187
+EGT +HT+F I Y + ++ +LY RC
Sbjct: 542 VEGTHWHTRFTHLINYGAGYYSYLYARC 569
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = -2
Query: 569 TSPSLKQRNRSLRKSPGSPGNNLPISSKRGHSNRACRLGPQ*WRSGAPSERRRNYPSPGS 390
+S S+K R K GS GN PI S + ++ + G + + P+P
Sbjct: 23 SSTSVKNRPTPT-KQEGSSGNAGPIRSPKAVASNQQKNGLTGVSRPLQQRPQSSSPNPRP 81
Query: 389 TGSRPGNSSHRNSPRK*TSLDK 324
GS NSS +S S+DK
Sbjct: 82 LGSGQPNSSKEHSSHNSNSVDK 103
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 528 LAE*SIALFQAGARGRNAIPPAALGAWCER-VGSCKPQRM 644
+ E S+ +F+ G+ A+PPAA + + G+C P+ M
Sbjct: 340 MPETSVVIFETRQGGQAAVPPAASSEFIVKDTGNCNPRLM 379
>03_01_0004 +
41829-42203,42376-42474,42699-42743,43604-43741,
43852-44157,44779-45689,45826-46093
Length = 713
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +2
Query: 479 DHACLKLGDCCPDFRETCGVIDCVVSSW---GSWSECDTTCGSGSMVRTRRIVQAPA 640
DH L CC + C DC SW G C G ++ ++ V AP+
Sbjct: 83 DHRLLSAAACCESCKAMCKANDCRCDSWVFCGDKKRCGQRFGE-CWLKKQKDVMAPS 138
>09_02_0343 + 7514514-7514948
Length = 144
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -2
Query: 602 SQSRRWYRIPTTSPSLKQRNRSLRKSPGSPGNNLPISSKRGHSNRACRLGPQ*WRSGAPS 423
+Q+ R R+ ++ R R S G G +RGH + G WRSG
Sbjct: 53 AQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRRGHCDAGGGDGATGWRSGEEG 112
Query: 422 E 420
E
Sbjct: 113 E 113
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 609 CERVGSCKPQRMGGRHCPSLVQRRACQEHQGC 704
C + C Q G+ CP L C+++ GC
Sbjct: 645 CRQYTPCGCQSACGKQCPCLTNGTCCEKYCGC 676
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 567 RGRNAIPPAALGAWCERVGSCKPQRMGGRHCPS--LVQRRACQEHQGCS 707
+G N I ++ VG C+ R+G H S V +++C +GCS
Sbjct: 700 QGGNRISSIEFASYGNPVGDCRSFRIGSCHAESSESVVKQSCIGRRGCS 748
>01_06_0216 +
27618116-27618548,27618960-27619042,27619169-27619225,
27619255-27619407,27619777-27619872,27620103-27620183,
27620184-27620254,27620343-27620385,27620502-27620582,
27620684-27620743,27621018-27621083,27621358-27621455,
27621794-27621842,27621933-27621977,27622845-27623369
Length = 646
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -2
Query: 554 KQRNRSLRKSPGSPGNNLPISSKRGHSNRACRLGPQ*WRSGAPSERRRNY 405
KQR+R K+ S GNN KRG C Q S S+ R Y
Sbjct: 580 KQRSRKKAKADSSSGNNAENGFKRGKGLAQCDRSHQSAGSSRRSKGPREY 629
>09_04_0685 + 19454234-19454399,19454500-19454819,19455337-19455594
Length = 247
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Frame = -2
Query: 698 LMFLACPPLDQRGAVPTSHALGLARSYAFAPCSQSRRWYRIPTTSPS-------LKQRNR 540
L+FL P + V + L A + A A Q++R P + NR
Sbjct: 123 LLFLRAKPPSRTHWVMHEYRLAAAGAVAVAAAGQTKRGNHSCMAQPGEWVVCRIFLKNNR 182
Query: 539 SLRKSPGSPGNNLPISSKRGHSNR 468
S R+ G P++ GH R
Sbjct: 183 SSRRRAGDADGETPVTGVHGHRRR 206
>08_02_1508 + 27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 27.9 bits (59), Expect = 9.1
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = -2
Query: 566 SPSLKQRNRSLRKSPGSPGNNLPISSKRGHSNRACRLGPQ*WRSGAPSERRRNYPSPGST 387
+P + N +++ S SP +P SS+R + P +G P+ RR P+P +
Sbjct: 916 TPDARGENTAVKPSVTSP-TGMPTSSRRQEPTPSVT-SP----TGVPTSPRRQEPTPDTQ 969
Query: 386 GSRPGNS--SHRNSPRK*TSLDKENG 315
R + S P ++ +KENG
Sbjct: 970 RRRAADQMPSQAPLPSSFSTRNKENG 995
>05_06_0171 -
26127547-26127592,26127955-26128079,26128187-26128336,
26128738-26128827,26129012-26129251,26129735-26130394
Length = 436
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 699 PDVLGMPSAGPARGSADLPCAGACTILRV 613
P V+G AG RG+ADLP A + + +
Sbjct: 60 PFVVGGRRAGGGRGAADLPAAAVASFVEI 88
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 443 IIEDLTDKPCYCDHACLKLGDCCPDFRETCGVID 544
+ + +KP + + +CLK CPD E G D
Sbjct: 800 LASNFAEKPAWRNSSCLKTALMCPDLYEQTGTGD 833
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 606 WCERVGSCKPQRMGGRHCPSLVQRRACQEHQGCS 707
W + C Q+M G+ C + C+++ GCS
Sbjct: 447 WYTQYNPCGCQQMCGKDCACVENGTCCEKYCGCS 480
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 559 LGLVVGMRYHLRLWEHGANA*DRASPSAWEVGTA 660
+ L+ Y L W+HG + ASPS+ V TA
Sbjct: 29 VALLCSASYFLGAWQHGGFSSPSASPSSVSVATA 62
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.9 bits (59), Expect = 9.1
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = -2
Query: 626 RSYAFAPCSQSRRWYRIPTTSPSLKQRNRSLRKSPGSPGNNLPISSKRGHSNRACRLGPQ 447
RSY+ +P S R R + S S + R+ S +SP N S+ +R+ R P+
Sbjct: 138 RSYSRSP-SPRRGRSRGRSYSRS-RSRSYSRSQSPRRDSRN-ERRSRSPRDSRSPRGSPR 194
Query: 446 *WRS--GAPSERRRNYPSPGSTGSRPGNSSHRNSPRK 342
RS G+P + R SP T S G+ SPR+
Sbjct: 195 DSRSPRGSPRDSRSPKGSPRDTQSPRGSPRDSRSPRR 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,231,265
Number of Sequences: 37544
Number of extensions: 509950
Number of successful extensions: 1707
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -