Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0689
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 422 ERRRNYPSPGSTGSRPGNSSHR 357
           E RRN P PGS G R    SHR
Sbjct: 53  EPRRN-PGPGSKGPRDFPRSHR 73


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -2

Query: 428  PSERRRNYPSP--GSTGSRPGNSSHRNSPR 345
            P  +  N P P  G  G+RP    +RN  R
Sbjct: 1016 PQSQEANKPKPATGGKGTRPKRGKYRNYDR 1045


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 599 QSRRWYRIPTTSPSLKQRNRSLR---KSPGSPGNNLPISSKRGHSN 471
           +++R YR    +   + RNR+ R   K P    NN P+S+   ++N
Sbjct: 51  KNKREYRKYRETSKERSRNRTERERSKEPKIISNNNPLSNNYNYNN 96


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 96  LREISLTHIRKLV*HVISKPGME*HNPGHDH 4
           L + +L     L+ +V S PG   H  GH H
Sbjct: 393 LEDNALASHNNLLNNVYSTPGPHHHTMGHGH 423


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 410 NYPSPGSTGSRPGNSSHRNSPRK*TSLDKEN 318
           +YP  GS+   P + S   S    TSL  EN
Sbjct: 82  SYPGGGSSSPSPSSPSSFFSSVSPTSLGSEN 112


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 680 PPLDQRGAVPTSHALGLARSY 618
           PPL+   A PT  ++G+  ++
Sbjct: 199 PPLNNNDATPTDFSMGVKNNH 219


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 341 IFAGYCDANYCRDANLCCPGR 403
           +  G C   Y +  NLC  GR
Sbjct: 178 LILGSCKCIYVQSINLCMAGR 198


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 584 YRIPTTSPSLKQRNRSLRKSPGSPGNNLPISSKRGHSNRACRLG 453
           + +  T  S+ Q  RSL  S  S   + P+SS   HS+     G
Sbjct: 47  FGVENTISSVPQPPRSLEGSYDSSSGDSPVSS---HSSNGIHTG 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,786
Number of Sequences: 438
Number of extensions: 5290
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)