BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0688 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 2.9 SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 26 5.0 SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 6.6 SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 8.7 SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 8.7 >SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 417 Score = 27.1 bits (57), Expect = 2.9 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 147 QGRLSCENFKIYRRVIAQDNLSPNG 73 +G L C+ K+YR A DNL NG Sbjct: 233 RGGLLCKGGKLYRTNTAYDNLCENG 257 >SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr 1|||Manual Length = 334 Score = 26.2 bits (55), Expect = 5.0 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = +2 Query: 317 ESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDILFC 496 E + NGV LV H AHG G ++ ++++ L +K +C E P Sbjct: 182 EIEYNGVKKLCHDLSIPLVAHSPLAHGLLTGRVTTMADIENL-KKHHQCNEQPPSSTFSS 240 Query: 497 TL 502 TL Sbjct: 241 TL 242 >SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 750 Score = 25.8 bits (54), Expect = 6.6 Identities = 13/60 (21%), Positives = 24/60 (40%) Frame = +2 Query: 308 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 487 ED ++ + V N Q + + F +PL I +E E + YE + ++ Sbjct: 48 EDAKNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEGFREFMENLEHRYEMTVSEV 107 >SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pombe|chr 3|||Manual Length = 534 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = +3 Query: 309 KILNHSLMESIIATVRRSHNWSSTVSKL-TEVHWASSLVSLTSKNYMRR*QNVTNF 473 K L+HSL SI +T+ S +SKL + H ++L + N+++ N F Sbjct: 287 KFLHHSLSPSIHSTLSSISKMESCLSKLGSAFHSLTALNEIQLANHLQVIANAFEF 342 >SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr 3|||Manual Length = 1374 Score = 25.4 bits (53), Expect = 8.7 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = +3 Query: 132 KISGLVVIKILRYMGRECARTVVFVERKILPL*SVLILCRYLKRKRL-NTRRHRYHPH 302 K+ L+ + Y + RTV+FVERK + L ++K L N R H + H Sbjct: 344 KVFKLLELLKATYRKSDSVRTVIFVERKA----TAFTLSLFMKTLNLPNIRAHSFIGH 397 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,942,899 Number of Sequences: 5004 Number of extensions: 58955 Number of successful extensions: 165 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 165 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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