Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0688
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   2.9  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   5.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 147 QGRLSCENFKIYRRVIAQDNLSPNG 73
           +G L C+  K+YR   A DNL  NG
Sbjct: 233 RGGLLCKGGKLYRTNTAYDNLCENG 257


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 317 ESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDILFC 496
           E + NGV          LV H   AHG   G ++  ++++ L +K  +C E  P      
Sbjct: 182 EIEYNGVKKLCHDLSIPLVAHSPLAHGLLTGRVTTMADIENL-KKHHQCNEQPPSSTFSS 240

Query: 497 TL 502
           TL
Sbjct: 241 TL 242


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/60 (21%), Positives = 24/60 (40%)
 Frame = +2

Query: 308 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 487
           ED ++  + V   N  Q + + F       +PL  I      +E  E +   YE +  ++
Sbjct: 48  EDAKNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEGFREFMENLEHRYEMTVSEV 107


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 309 KILNHSLMESIIATVRRSHNWSSTVSKL-TEVHWASSLVSLTSKNYMRR*QNVTNF 473
           K L+HSL  SI +T+       S +SKL +  H  ++L  +   N+++   N   F
Sbjct: 287 KFLHHSLSPSIHSTLSSISKMESCLSKLGSAFHSLTALNEIQLANHLQVIANAFEF 342


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 132 KISGLVVIKILRYMGRECARTVVFVERKILPL*SVLILCRYLKRKRL-NTRRHRYHPH 302
           K+  L+ +    Y   +  RTV+FVERK     +   L  ++K   L N R H +  H
Sbjct: 344 KVFKLLELLKATYRKSDSVRTVIFVERKA----TAFTLSLFMKTLNLPNIRAHSFIGH 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,899
Number of Sequences: 5004
Number of extensions: 58955
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)