Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0688
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 3e-27
SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12) 31 1.3
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 30 1.7
SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15) 30 1.7
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 30 1.7
SB_45989| Best HMM Match : TFIIE_alpha (HMM E-Value=5) 30 1.7
SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6) 30 1.7
SB_33553| Best HMM Match : DUF101 (HMM E-Value=3.7) 30 1.7
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07) 30 1.7
SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18) 30 1.7
SB_22623| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 30 1.7
SB_19549| Best HMM Match : DUF101 (HMM E-Value=3.7) 30 1.7
SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36) 30 1.7
SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32) 30 1.7
SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32) 30 1.7
SB_55857| Best HMM Match : STN (HMM E-Value=6) 30 1.7
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11) 30 1.7
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12) 30 1.7
SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18) 30 1.7
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18) 30 1.7
SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3) 29 4.0
SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36) 29 4.0
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 29 4.0
SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21) 29 4.0
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 29 5.3
SB_8291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_46923| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 9.3
SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1) 28 9.3
SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1) 28 9.3
>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 119 bits (286), Expect = 3e-27
Identities = 54/76 (71%), Positives = 65/76 (85%)
Frame = +2
Query: 485 ILFCTLNTHKVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAF 664
ILFCTLNT++VDM++LLGGQIGL+DFIFAH KG+ K +E+VK + ALGLTITDNGAG AF
Sbjct: 237 ILFCTLNTYRVDMERLLGGQIGLDDFIFAHIKGQKKIVEVVKDQPALGLTITDNGAGCAF 296
Query: 665 IKRIKEGXIVSRIPHI 712
+KRIKEG I + P I
Sbjct: 297 VKRIKEGSIADKTPQI 312
>SB_23016| Best HMM Match : efhand (HMM E-Value=3e-12)
Length = 387
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 458 ECYEFSPEDILFCTLNTHKVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTI 637
E YE+ + ++ TL+ D+ K G + LED ++ + +E + VKTE LT+
Sbjct: 199 EEYEYMKDVVVEETLD----DIDKNKDGYVSLEDDLYPESEKEDEEPDWVKTEREQFLTV 254
Query: 638 TD-NGAGYAFIKRIKEGXIVSRIPHIG 715
D N G +++ + + H+G
Sbjct: 255 RDKNRDGKMDKDEVRDWIVPADFDHVG 281
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 646 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 689
>SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)
Length = 615
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 243 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 286
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 693 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 736
>SB_45989| Best HMM Match : TFIIE_alpha (HMM E-Value=5)
Length = 194
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRI 676
KE+E+VK+ LGLTI+DN + A + +
Sbjct: 20 KELEVVKSTKLLGLTISDNLSWNAHVNEV 48
>SB_45959| Best HMM Match : DUF1091 (HMM E-Value=3.6)
Length = 360
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRI 676
KE+E+VK+ LGLTI+DN + A + +
Sbjct: 129 KELEVVKSTKLLGLTISDNLSWNAHVNEV 157
>SB_33553| Best HMM Match : DUF101 (HMM E-Value=3.7)
Length = 252
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 75 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 118
>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRI 676
KE+E+VK+ LGLTI+DN + A + +
Sbjct: 547 KELEVVKSTKLLGLTISDNLSWNAHVNEV 575
>SB_30405| Best HMM Match : rve (HMM E-Value=5.1e-07)
Length = 409
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 104 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 147
>SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)
Length = 802
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 590 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 633
>SB_22623| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 391
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 272 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 315
>SB_19549| Best HMM Match : DUF101 (HMM E-Value=3.7)
Length = 225
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 48 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 91
>SB_15390| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 748
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 248 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 291
>SB_10309| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 546
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 75 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 118
>SB_1714| Best HMM Match : rve (HMM E-Value=9.6e-32)
Length = 517
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 75 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 118
>SB_55857| Best HMM Match : STN (HMM E-Value=6)
Length = 262
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 143 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 186
>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRI 676
KE+E+VK+ LGLTI+DN + A + +
Sbjct: 395 KELEVVKSTKLLGLTISDNLSWNAHVNEV 423
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 794 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 837
>SB_35114| Best HMM Match : RVT_1 (HMM E-Value=2.2e-11)
Length = 512
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 203 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 246
>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
Length = 642
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRI 676
KE+E+VK+ LGLTI+DN + A + +
Sbjct: 465 KELEVVKSTKLLGLTISDNLSWNAHVNEV 493
>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 669 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 712
>SB_15386| Best HMM Match : CSE2 (HMM E-Value=0.18)
Length = 379
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRI 676
KE+E+VK+ LGLTI+DN + A + +
Sbjct: 202 KELEVVKSTKLLGLTISDNLSWNAHVNEV 230
>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRI 676
KE+E+VK+ LGLTI+DN + A + +
Sbjct: 113 KELEVVKSTKLLGLTISDNLSWNAHVNEV 141
>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
Length = 1046
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 89 EAFVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 132
>SB_9645| Best HMM Match : DUF101 (HMM E-Value=4.3)
Length = 360
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ A + P E+E ++ AL T++ NG AF R +G
Sbjct: 118 EAFVSAIDESIPFEVETDASDVALAATLSQNGRPVAFFSRALQG 161
>SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 1048
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 560 FIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 695 FVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 736
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 554 EDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
E F+ + + P E+E +E AL T++ NG AF R +G
Sbjct: 693 EAFVSSIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 736
>SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)
Length = 1032
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 560 FIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIKRIKEG 685
F+ A + P E+E +E AL T++ NG AF R +G
Sbjct: 311 FVSAIDESIPFEVETDASEVALAATLSQNGRPVAFFSRALQG 352
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 246 CRYLKRKRLNTRRHRYHPHQ*KI---LNHSLMESIIATVRRSH 365
C YL+ + +TR HR+HPH +I N S S+ +TV H
Sbjct: 31 CPYLQNQ--STREHRHHPHHRQIHHVPNPSYCPSMSSTVPLQH 71
>SB_8291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGXIVSRI 703
KEIE+V + LGLT+T+N G + R ++ + I
Sbjct: 77 KEIEVVTSVKLLGLTLTNNLIGTTMLLRSRKRLVKGSI 114
>SB_46923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGXIVSRI 703
KEIE+V + LGLT+T+N G + R ++ + I
Sbjct: 128 KEIEVVTSVKLLGLTLTNNLIGTTMLLRSRKRLVKGSI 165
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 590 KEIEIVKTEDALGLTITDNGAGYAFIKRIKEGXIVSRI 703
K+IE VKT LGLTI+D+ A I + + SR+
Sbjct: 1988 KDIEAVKTAKLLGLTISDDLKWNAHISEVTR-KVASRL 2024
>SB_27782| Best HMM Match : Borrelia_orfA (HMM E-Value=0.1)
Length = 633
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 324 SLMESIIATVRRSHNWSSTVSKLTEVHWASSLVSLTSKNY 443
SL+ + R HN SS +++ + + SSL++ TS+ Y
Sbjct: 385 SLLTRTLRKTMRKHNTSSLLTRTSRKYNKSSLLTRTSRKY 424
>SB_28166| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
Length = 279
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 336 SIIATVRRSHNWSSTVSKLTEVHWASSLVSLTSKNY 443
S++ R HN SS +++ + + SSL++ TS+ Y
Sbjct: 35 SLLTRTMRKHNTSSLLTRTSRKYNKSSLLTRTSRKY 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,469,963
Number of Sequences: 59808
Number of extensions: 421747
Number of successful extensions: 1049
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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