Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0688
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical p...   119   3e-27
Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical pr...   112   3e-25
Z66511-1|CAA91314.1|  537|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z78014-2|CAB01429.1|  122|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.     28   8.1  

>U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical
           protein C35D10.2 protein.
          Length = 357

 Score =  119 bits (286), Expect = 3e-27
 Identities = 56/132 (42%), Positives = 81/132 (61%)
 Frame = +2

Query: 308 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 487
           E++ S    V N       QL F CQ AHGSP+G+I  ++N++ELY+ IA+C+  S +DI
Sbjct: 43  EESSSTIMTVVNPLMVAARQLKFACQMAHGSPVGIIDKWNNMEELYQSIADCFTISKDDI 102

Query: 488 LFCTLNTHKVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFI 667
           +F T+N  K DMK +  G +  +D +FAH +G+  E+ +VK     G+TITDNG G AFI
Sbjct: 103 IFLTVNDFKPDMKNMFTGTLNFKDMLFAHIRGQATELRVVKDAKNFGVTITDNGLGNAFI 162

Query: 668 KRIKEGXIVSRI 703
           K I    +  R+
Sbjct: 163 KVISPDSVFDRM 174


>Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical
           protein F44D12.4 protein.
          Length = 357

 Score =  112 bits (269), Expect = 3e-25
 Identities = 52/132 (39%), Positives = 80/132 (60%)
 Frame = +2

Query: 308 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 487
           E+  S    V N       +L F CQ AHGSP+ +I  +++++ELY+ IA+ +  S +DI
Sbjct: 43  EEPSSSIMPVVNPLMVAAKELKFPCQLAHGSPVAIIDKWNDMEELYQSIADFFAISKDDI 102

Query: 488 LFCTLNTHKVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFI 667
           +F T+N  K DMK +  G +  +D +FAH +G+  E+ +VK  +  G+T+TDNG G AFI
Sbjct: 103 IFLTVNDFKPDMKNMFSGTLNFKDMLFAHVRGQATELRMVKDANVFGVTVTDNGLGNAFI 162

Query: 668 KRIKEGXIVSRI 703
           K I  G +  R+
Sbjct: 163 KVISPGSVFDRM 174


>Z66511-1|CAA91314.1|  537|Caenorhabditis elegans Hypothetical
           protein F07A11.1 protein.
          Length = 537

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 500 LNTHKVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDA 622
           +N   ++MKK       LE++IF H   R +++E+   +DA
Sbjct: 252 VNAEMIEMKKRRPKSPVLENYIFRHESPRSRDVEVRTRKDA 292


>Z78014-2|CAB01429.1|  122|Caenorhabditis elegans Hypothetical
           protein F42E8.2 protein.
          Length = 122

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 401 PLGLISGFSNVKELYEKIAECYEFSPEDILFCTLNTHKVDMKKLLG--GQIGLEDFIFAH 574
           PL ++ GF    E   K   C     E I+F + N ++  +  + G     G +D +   
Sbjct: 14  PLSIVKGFIRKYEDELKGFPCENVCAEKIIFKSFNNNEYRIAPVFGFVDPSGSKDVVITR 73

Query: 575 RKGRPKEIEIV 607
             G PK+ ++V
Sbjct: 74  TAGAPKDDKLV 84


>Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical
           protein R03C1.3a protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 474 ENS*HSAIFSYNSLTLEKPEMRPNG 400
           EN  HS+ +S ++L LEK E  P+G
Sbjct: 20  ENRKHSSTYSISNLLLEKKESSPSG 44


>AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 474 ENS*HSAIFSYNSLTLEKPEMRPNG 400
           EN  HS+ +S ++L LEK E  P+G
Sbjct: 20  ENRKHSSTYSISNLLLEKKESSPSG 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,231,741
Number of Sequences: 27780
Number of extensions: 331928
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)