Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0688
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 470 FSPEDILFCTLNTHKVDMKKLL 535
           F P  +    LN H  DM+KL+
Sbjct: 634 FKPPTLTESLLNRHNEDMEKLM 655


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 651 APLSVIVNPRASSVLTISISFGRPFL 574
           +P+SV V+P A+SV+  +++   P L
Sbjct: 458 SPMSVQVDPMAASVVAAALTGTYPTL 483


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 327 LMESIIATVRRSHNWSSTVSKLTEVHWAS 413
           + E +   +  S NW ST++K+  ++ A+
Sbjct: 1   MAEKLRICIVGSGNWGSTIAKIIGINAAN 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,279
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)