Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0688
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA ligase-r...    31   1.1  
At1g23540.1 68414.m02960 protein kinase family protein contains ...    31   1.1  
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr...    29   2.5  
At3g05360.1 68416.m00584 disease resistance family protein / LRR...    28   5.8  

>At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA
           ligase-related similar to SP|P07814 Bifunctional
           aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
           synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
           Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
           ligase)] {Homo sapiens}; contains Pfam profile PF03129:
           Anticodon binding domain
          Length = 309

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +2

Query: 422 FSNVKELYEKIAECYEFSPEDILFCTLNTH-KVDMKKLLGGQIGLEDFIFAHRKGRPKEI 598
           F  + E YE +  CY   P  I    L  +    +K LL   +GL++ +    +G P E 
Sbjct: 27  FGELVEYYESVKGCYILKPSGISDEYLERYTNTTLKGLLQRLLGLQELVDKRTQGPPFEA 86

Query: 599 EIVKTEDALGL 631
             +   D  GL
Sbjct: 87  ACMTHGDDKGL 97


>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 311 DTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYE-FSPEDI 487
           +++ Q + + NS GT       H  Q+ G+P   I G       YE++AE  + F+ ++I
Sbjct: 317 NSQQQQSSMGNSYGTAGGGYPHHQMQSSGTPDSAILGSGQTHFSYEELAEITQGFARKNI 376

Query: 488 L 490
           L
Sbjct: 377 L 377


>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P22413
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 461

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 639 QITEQVMHL*KGLKKAXLFQEYHILEVGDH 728
           ++ + +  + KGLK+  +F E H++ +GDH
Sbjct: 240 RVDKMIGRVIKGLKQREIFDEVHVILLGDH 269


>At3g05360.1 68416.m00584 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to
           elicitor-inducible LRR receptor-like protein EILP
           [Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
           Cf-2.2 [Lycopersicon pimpinellifolium]
           gi|1184077|gb|AAC15780
          Length = 786

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 691 CFKNTTYWRSEIILRN 738
           C KN+TYW   ++LRN
Sbjct: 419 CLKNSTYWLKGLVLRN 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,246
Number of Sequences: 28952
Number of extensions: 296960
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)