Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0686
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668...    41   3e-07
11_01_0391 + 2949070-2950551                                           29   3.8  
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296...    28   6.6  

>01_06_1767 +
           39766350-39766508,39766602-39766654,39766763-39766829,
           39766929-39766984,39767287-39767791,39767981-39768069,
           39768678-39768768,39769052-39769177,39769256-39769513,
           39769748-39770029
          Length = 561

 Score = 40.7 bits (91), Expect(2) = 3e-07
 Identities = 27/76 (35%), Positives = 35/76 (46%)
 Frame = +3

Query: 132 DVVLLGRRPLSDLRDRIACNNDHDMRVDVSHXXXXXXXXXXKEVFPSGFLFINNTFYVDT 311
           + ++LG + L+DLRD I C  D  M V   H               SG+  I +TFY DT
Sbjct: 343 EFLVLGSQLLTDLRDNIYCFKDKLMNVAKQHVH-------------SGYFLIEDTFYNDT 389

Query: 312 REGCVDNSAVIRTWAR 359
           R   VD S  I  W +
Sbjct: 390 RRSTVDYSKPILDWIK 405



 Score = 31.1 bits (67), Expect(2) = 3e-07
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 369 IGDFPXQDMCSVNLEDIVIKLGHPEVYVHQGACEHVFTFSEVXCV 503
           + DF    M      D+  +LG   +Y HQG C+H+    ++  +
Sbjct: 439 VPDFKSAKMEKTRFSDLNFRLGAGYLYCHQGNCKHMIVIRDMRLI 483


>11_01_0391 + 2949070-2950551
          Length = 493

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 298 FTWTQGKGAWTTAQSYARGRDGRGLEI 378
           F W   + AWT  QSY +   G G+++
Sbjct: 265 FIWDVDEAAWTKFQSYLQNMPGTGIKV 291


>11_01_0393 +
           2961434-2961564,2961862-2961865,2962429-2963970,
           2964572-2964675,2964791-2964877,2965378-2965414,
           2965729-2965801,2965963-2967494
          Length = 1169

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 298 FTWTQGKGAWTTAQSYARGRDGRGLEI 378
           F W   + AWT  QSY +   G G+++
Sbjct: 342 FIWDVDEAAWTKFQSYLQNMPGIGIKV 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,513,670
Number of Sequences: 37544
Number of extensions: 231329
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)