Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0686
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_5526| Best HMM Match : zf-C3HC4 (HMM E-Value=2)                     28   6.6  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     27   8.8  
SB_17347| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 411 EDIVIKLGHPEVYVHQGACEHVFTFSEVXCVT 506
           +D V +  HP VY     C+HVF F    C++
Sbjct: 152 DDNVNRYKHPPVYNKSCTCKHVFWFKTHGCLS 183


>SB_5526| Best HMM Match : zf-C3HC4 (HMM E-Value=2)
          Length = 106

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 438 PEVYVHQGACEHVFTF 485
           P    HQGACEHVF +
Sbjct: 87  PPTAPHQGACEHVFCY 102


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 406 LTEHMSWXGKSPIPFRRAHVRMTALLSTHPSLVST*NVLF 287
           L E +SW   SP PF R H   T + +   +LVS   + F
Sbjct: 600 LVEQLSWF--SPTPFCRGHANNTVVDNVGRNLVSRLKITF 637


>SB_17347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 258 EVFPSGFLFINNTFYVDTRE-GCVDNSA 338
           ++  SGF FI   FY D R+  C D SA
Sbjct: 1   DICKSGFFFIEEVFYNDMRDPSCKDYSA 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,496,149
Number of Sequences: 59808
Number of extensions: 267565
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)